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Report for CCDS70757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70757.1 Public Mus musculus 17 Synj2 23 108 98 CCDS HistoryNCBI Gene:20975Re-query CCDS DB by CCDS ID:70757.1Re-query CCDS DB by GeneID:20975See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115785.7 ENSMUSP00000111451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115785.7Link to Ensembl Protein Viewer:ENSMUSP00000111451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115785Re-query CCDS DB by Protein ID:ENSMUSP00000111451
Original member Current member NCBI NM_001290698.1 NP_001277627.1 Accepted alive Link to Nucleotide Sequence:NM_001290698.1Link to Protein Sequence:NP_001277627.1Re-query CCDS DB by Nucleotide ID:NM_001290698Re-query CCDS DB by Protein ID:NP_001277627Link to BLAST:NP_001277627.1

Chromosomal Locations for CCDS 70757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6007727 6007732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6007938 6008110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6009732 6009813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6010396 6010545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6010660 6010825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6013508 6013699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6016266 6016347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6017487 6017627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6019286 6019478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6022099 6022257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6023659 6023815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6024984 6025101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6026156 6026374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6026477 6026555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6027147 6027315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6028419 6028586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6032697 6032809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6033815 6033923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6035411 6035559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6037384 6038115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3357 nt):
ATGCAGAAGTTGCTCTGGGCTTCTTGCCACGCGGGTGACACACCTATGATAAATTTTGACTTCCATCAGT
TTGCCAAAGGTAGGAAGCTAGAGAAATTGGAGAACCTGTTGAGACCTCAGTTACAGCTACACTGGGAAGA
CTTCGGCGTGTTTGCGAAGGGCGAGAATGTAAGTCCACGGTTTCAGAAAGGCACTCTGCGGATGAACTGT
CTCGACTGTCTGGATAGAACCAACACTGTGCAGTGCTTCATTGCTCTTGAGGTCCTTCATCTGCAGCTTG
AGAGCTTGGGGCTAAATTCAAAGCCCATCATTGACCGTTTTGTGGAGTCCTTCAAAGCCATGTGGTCTCT
GAATGGGCACAGCCTGAGCAAGGTGTTCACAGGGAGCAGGGCCCTGGAAGGAAAGGCCAAGGTGGGAAAG
CTGAAGGATGGGGCCCGATCCATGTCTCGCACCATCCAGTCCAACTTCTTCGACGGGGTGAAGCAGGAGG
CCATCAAGCTACTGCTAGTCGGAGATGTCTACAATGAAGAGTCTACAGACAAAGGACGGATGCTGCTGGA
CAACACGGCCCTTCTGGCGACCCCCAGGATCTTGAAGGCCATGACAGAACGCCAGTCGGAATTCACGAAT
TTCAAGCGCATCCAGATTGCTGTGGGGACCTGGAATGTGAACGGAGGAAAGCAATTCCGTAGCAATCTCC
TGGGGACGGCTGAGCTCACGGACTGGCTCCTAGATGCTCCTCAGCTGTCAGGAGCAGTGGACTCCCAGGA
TGATGGCAGTCCTGCTGACGTATTTGCCATCGGGTTTGAGGAGATGGTGGAACTGAGTGCGGGAAATATT
GTCAATGCCAGCACCACCAACAGGAAGATGTGGGGCGAGCAGCTTCAGAAAGCCATCTCCCGCTCCCATC
GGTACATCCTCTTGACCTCCGCACAGCTGGTGGGCGTCTGTCTTTACATCTTTGTACGTCCGTACCACGT
CCCGTTCATCAGAGACGTGGCCATCGACACCGTGAAGACCGGCATGGGGGGAAAGGCGGGGAATAAGGGT
GCTGTGGGCATCCGCTTCCAGCTCCACAGCACCAGTTTCTGCTTCGTCTGTAGCCACCTGACGGCTGGGC
AGTCTCAGGTGAAGGAGAGGAATGAAGACTACCGGGAGATCACGCACAAACTCTCCTTCCCTTCGGGGAG
AAACATATTTTCACATGATTACGTGTTTTGGTGTGGCGATTTCAACTACCGTATTGATCTTACTTACGAA
GAAGTCTTCTATTTTGTTAAACGCCAAGACTGGAAGAAACTTATGGAATTCGATCAGTTACAGTTACAGA
AATCAAGTGGAAAAATTTTTAAAGACTTTCATGAAGGAGCCGTTAACTTCGGACCCACCTACAAGTATGA
CGTTGGATCAGCTGCCTACGACACAAGTGACAAGTGCCGTACCCCAGCCTGGACAGACAGGGTGCTGTGG
TGGAGGAAGAAGCATCCATATGATAAAACAGCTGGTGAACTCAACCTTCTAGACAGCGATCTAGACGGCG
ATCCCCAAATCAGACACACCTGGTCTCCAGGCACTCTGAAATACTACGGCCGTGCAGAGCTGCAGGCGTC
TGATCACAGACCTGTGCTGGCCATTGTGGAGGTGGAGGTTCAAGAGGTGGATGTAGGAGCCCGGGAGAGG
GTCTTCCAGGAAGTGTCCTCTGTCCAAGGCCCGCTGGATGCCACCGTTGTTGTAAACCTCCAGTCTCCAA
CCCTAGAAGAGAAAAATGAATTTCCAGAGGACCTGCGCACAGAACTTATGCAGACTTTGGGGAATTATGG
GACGATTATTCTAGTCAGGATCAACCAAGGGCAGATGCTGGTGACGTTTGCAGACAGCCACTCGGCTCTC
AGTGTGCTGGATGTGGATGGTATGAAGGTGAAAGGCAGGGCCGTGAAGATTCGACCAAAGACCAAAGATT
GGCTAGAAGGCCTGAGAGAGGAGCTTCTCCGGAAGCGAGACAGCATGGCCCCTGTGTCTCCCACCGCCAA
CTCCTGCTTGTTGGAGGAGAACTTTGACTTCTCGAGTCTGGACTATGAGTCCGAAGGGGATGTTCTTGAA
GAGGATGAAGACTATTTAGTGGATGGGTTTGGCCAGCCTGTAGTCTCAGACAGTGAGCTCGGTGGAGACA
ACTCTTCCGACACCATGAGCTCCTTGACACCCGCCAGCAAGTCTCCCGCCCTGGCTAAAAAGAAGCAACA
TCCAACATACAAAGCTGGCTTAATGGTGAAGAAGTCAGCCTCAGACGCGTCCATCTCTTCTGGCACTCAT
GGACAATATTCCATCTTGCAGACAGCGAAACTTCTCCCAGGAGCACCCCAGCAACCACCCAAGGCTAGAA
CTGGAATAAGTAAACCTTACAACGTCAAACAGATCAAAACCACCAACGCTCAGGAGGCAGAAGCAGCTAT
CCGGTGTCTCCTGGAAGCTAGCGGAGGGGTCCCGGAATCAGCCCCAGGTGCCATACCCCTGAGAAACCAA
GGGTCTTCTAAGCCAGAGGCCACCCTGGGGCCCCCAGCCCTGCCCCGCCGGCCTGCTCCAAGGGTTCCCA
CTATGAAGAAACCAACTTTGAGGAGGACAGGAAAGCCCATGTTACCAGAAGAAAACTTTGAGCCACAGCC
TGTCCATTTTACAATGGCTTCCCAGGAAATGAACCTTGAGACCCCTCCTCCAATAACAGCTACTCCCATC
CCGCCTGTTCCCAAACCAAGAACACTTCAGCCTGGGAAAGGTGTTGAGGGGAGGCCAAGCAGCGGTAAGC
CAGAACCAGATGAAGCTCCTTCCGTGACAGGCACTGTGGAGTCACCACCTCCAGAGGCCCAGGAGGCCCC
GTCTCTGGCTCCCAAGGTGCCTCCGAGGAGGAAGAAGTCTGCACCAGCGGCCTTCCACCTGCAGGTCCTG
CAGAACAACAGCCAAGTTCTCCAGGGCCTCACGTGCTCCAGCAGTTCTCCACCCTCACTGAAGCCCGACA
CCCACCCGCTCTGTCTACAAGTGGCACTTGGCACTTCATCTGCCAGAAGCCCTGAAACCCATGGCCCCAG
AGTGACAGAGCCCGAGGCGGCCTCTTTTCATGGCAACTATCCAGATCCCTTCTGGAGCCTTCTCCACCAC
CCTAAGCTGTTGAACAATACCTGGCTGTCCAAGAGCTCCGAGCCTTTAGACGTGGGGTCCAGGAACCCTG
AGAGGACACACACAGAGCCGGCACAGGTCAATGCATCGTTGGCTGAGAGGGGGCTTCCACCAGACCATGG
GGGAAAAGACTTAAGTCACTGGGTGACAGCTAGTAACAAAGACAAGAGGACAACATTAGGTGTTTGA

Translation (1118 aa):
MQKLLWASCHAGDTPMINFDFHQFAKGRKLEKLENLLRPQLQLHWEDFGVFAKGENVSPRFQKGTLRMNC
LDCLDRTNTVQCFIALEVLHLQLESLGLNSKPIIDRFVESFKAMWSLNGHSLSKVFTGSRALEGKAKVGK
LKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYNEESTDKGRMLLDNTALLATPRILKAMTERQSEFTN
FKRIQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQDDGSPADVFAIGFEEMVELSAGNI
VNASTTNRKMWGEQLQKAISRSHRYILLTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKG
AVGIRFQLHSTSFCFVCSHLTAGQSQVKERNEDYREITHKLSFPSGRNIFSHDYVFWCGDFNYRIDLTYE
EVFYFVKRQDWKKLMEFDQLQLQKSSGKIFKDFHEGAVNFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLW
WRKKHPYDKTAGELNLLDSDLDGDPQIRHTWSPGTLKYYGRAELQASDHRPVLAIVEVEVQEVDVGARER
VFQEVSSVQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGNYGTIILVRINQGQMLVTFADSHSAL
SVLDVDGMKVKGRAVKIRPKTKDWLEGLREELLRKRDSMAPVSPTANSCLLEENFDFSSLDYESEGDVLE
EDEDYLVDGFGQPVVSDSELGGDNSSDTMSSLTPASKSPALAKKKQHPTYKAGLMVKKSASDASISSGTH
GQYSILQTAKLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEASGGVPESAPGAIPLRNQ
GSSKPEATLGPPALPRRPAPRVPTMKKPTLRRTGKPMLPEENFEPQPVHFTMASQEMNLETPPPITATPI
PPVPKPRTLQPGKGVEGRPSSGKPEPDEAPSVTGTVESPPPEAQEAPSLAPKVPPRRKKSAPAAFHLQVL
QNNSQVLQGLTCSSSSPPSLKPDTHPLCLQVALGTSSARSPETHGPRVTEPEAASFHGNYPDPFWSLLHH
PKLLNNTWLSKSSEPLDVGSRNPERTHTEPAQVNASLAERGLPPDHGGKDLSHWVTASNKDKRTTLGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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