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Report for CCDS71028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71028.1 Public Mus musculus 2 Slc25a25 23 108 98 CCDS HistoryNCBI Gene:227731Re-query CCDS DB by CCDS ID:71028.1Re-query CCDS DB by GeneID:227731See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113307.8 ENSMUSP00000108932.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113307.8Link to Ensembl Protein Viewer:ENSMUSP00000108932.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113307Re-query CCDS DB by Protein ID:ENSMUSP00000108932
Original member Current member NCBI NM_001290558.1 NP_001277487.1 Accepted alive Link to Nucleotide Sequence:NM_001290558.1Link to Protein Sequence:NP_001277487.1Re-query CCDS DB by Nucleotide ID:NM_001290558Re-query CCDS DB by Protein ID:NP_001277487Link to BLAST:NP_001277487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277487.1 469 A2ASZ8-1 469 100% 0 0

Chromosomal Locations for CCDS 71028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32416138 32416322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32416409 32416559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417092 32417259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417346 32417453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32417724 32417876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32419048 32419206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32420305 32420416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421303 32421390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32421473 32421599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32423794 32423952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCTCTGCCTGTGCCTGTATGTGCCCATCGCCGGGGCGGCTCAGACTGAGTTCCAGTACTTTGAGTCCA
AGGGGCTTCCTGCCGAGCTGAAATCCATCTTCAAACTCAGTGTCTTTATCCCCTCTCAAGAGTTCTCCAC
ATACCGCCAATGGAAGCAGAAAATTGTGCAAGCAGGTGACAAGGACCTTGATGGGCAACTGGACTTTGAA
GAGTTTGTACATTACCTCCAAGATCATGAGAAAAAACTGAGGCTGGTGTTCAAGAGTCTGGACAAAAAGA
ATGATGGTCGAATCGATGCTCAGGAGATCATGCAGTCCCTGCGGGACCTGGGTGTCAAGATCTCGGAACA
GCAGGCGGAGAAGATTCTTAAGAGCATGGATAAGAATGGCACGATGACCATCGACTGGAACGAGTGGAGG
GACTACCACCTCCTGCACCCTGTGGAGAACATCCCGGAGATCATCCTGTACTGGAAGCACTCGACGATCT
TCGATGTCGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTG
GAGGCACCTGGTGGCAGGAGGTGGGGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTG
AAGGTGCTCATGCAGGTCCATGCCTCCCGCAGCAACAACATGTGCATCGTAGGTGGATTCACACAGATGA
TTCGAGAAGGGGGAGCCAAGTCACTCTGGCGGGGCAACGGCATCAATGTCCTCAAAATTGCCCCTGAGTC
GGCCATCAAATTCATGGCATATGAGCAGATGAAACGGCTTGTCGGTAGTGATCAGGAGACGCTGAGGATC
CACGAAAGGCTTGTGGCAGGCTCCTTGGCCGGAGCCATTGCCCAGAGTAGCATCTACCCAATGGAGGTTC
TGAAGACCCGAATGGCCCTGCGGAAAACAGGACAGTACTCCGGCATGCTGGACTGTGCCAGGAGGATCTT
GGCTAAAGAGGGTGTAGCTGCCTTCTACAAAGGCTACATCCCCAACATGCTGGGGATCATCCCCTATGCT
GGCATCGACCTAGCTGTCTATGAGACATTGAAAAATACCTGGCTCCAGCGCTACGCAGTAAACAGTGCAG
ACCCCGGTGTGTTCGTGCTCCTGGCCTGTGGTACTATCTCCAGTACTTGTGGCCAGCTGGCCAGCTACCC
ACTAGCCCTGGTCAGGACCCGGATGCAGGCACAAGCCTCCATTGAGGGCGCACCTGAGGTAACCATGAGC
AGCCTCTTCAAACAGATTCTGCGGACTGAGGGGGCCTTTGGGCTCTACCGGGGGCTGGCCCCCAACTTCA
TGAAGGTGATCCCGGCTGTGAGCATCAGCTACGTGGTCTACGAAAACCTGAAGATCACCCTGGGCGTGCA
GTCTCGGTGA

Translation (469 aa):
MLCLCLYVPIAGAAQTEFQYFESKGLPAELKSIFKLSVFIPSQEFSTYRQWKQKIVQAGDKDLDGQLDFE
EFVHYLQDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVKISEQQAEKILKSMDKNGTMTIDWNEWR
DYHLLHPVENIPEIILYWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHLVAGGGAGAVSRTCTAPLDRL
KVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRI
HERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYA
GIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMS
SLFKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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