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Report for CCDS15842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15842.1 Public Mus musculus 2 Gtf3c5 23 108 98 CCDS HistoryNCBI Gene:70239Re-query CCDS DB by CCDS ID:15842.1Re-query CCDS DB by GeneID:70239See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028157.8 ENSMUSP00000028157.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028157.8Link to Ensembl Protein Viewer:ENSMUSP00000028157.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028157Re-query CCDS DB by Protein ID:ENSMUSP00000028157
Original member Current member NCBI NM_148928.3 NP_683730.1 Accepted alive Link to Nucleotide Sequence:NM_148928.3Link to Protein Sequence:NP_683730.1Re-query CCDS DB by Nucleotide ID:NM_148928Re-query CCDS DB by Protein ID:NP_683730Link to BLAST:NP_683730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683730.1 514 Q8R2T8-2 514 100% 0 0

Chromosomal Locations for CCDS 15842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28567633 28567784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28568485 28568627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28569292 28569374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28570419 28570516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28570613 28570693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28571113 28571227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28572196 28572300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28573377 28573572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28577876 28578074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28579518 28579737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28582825 28582977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCGGCGGCGGAGCCGGATGCGGACCCGAAGGCCGCCATCCCTGTGGACCTGCGGCGGGAACGGCGCT
TGGTGTGCGTGGAGTACCCGGGCGTAGTACGTAACGAGGCCAAGATGCTACAGACCCTGGGCGGCGAGGA
AAGCGTCTCTCGAATCTACACTGACCCTACCAAGAGGCTCGAACTCTACTTCCGGCCCAAGGACCCATAC
TGCCACCCTGTGTGTGCTAACCGTTTCAGTACCAGCAGCCTGCTGCTCCGGATCCGGAAAAGAACAAGGC
GTCGGAGAGGTGTCCTGGGAGACGAGGCCCACCCCCAGGTCACGTTCAACTTGGAGATCATTGGCATCAT
CTCCACAATTTACAAATTCCAGGGAATGTCTGACTTCCAGTACTTGGCAGTGCACACAGAAGCTGGTGGC
AAGCATGTTTCCATGTATGACAGAGTGCTCATGCGCAAGCCTGAGAAGGAGGAGTTCTTCCATCAGGAGC
TACCACTCTACATCCCCCCACCCATCTTCTCCAGGCTGGACACCCCTGTGGACTATTTCTATCGCCCTGA
GACACAGCACCGAGAAGGCTATCATAATCCCACCATCTCAGGGGAGAACCTGATTGGACTGAGTAGAGCC
CGGCGCCCCCACAACGCCATCTTTGTCAACTTTGAGGACACTGAGGTTCCTGAACAGCCTTTGGAGGCTG
CAGTCCAGACATGGAAGAAGGCCTGCACCAATCCCATAGATCAGAAGGTGGAAGAGGAGCTGAGGAAGCT
CTTTGACATCCGTCCTGTTTGGTCACGAAATGCTGTCAAGTCTAACGTCAGTGTCCATCCTGACAAGCTT
AAGATCTTGCTTCCCTATATGGCTTATTACATGATAACAGGCCCGTGGAGAAGCTTGTGGATTCGATTTG
GCTATGACCCTCGAAAACACCCAGATGCCAAGATTTATCAAGTCCTTGATTTTCGAATCCGCTGTGGAAT
GAAATACGGTTATGGCTCCAGGGACATGCCTGTTAAAGCGAAGCGTAGCACGTACAACTACAGCCTGCCC
ATCACCGTCAAGAAGACATCCAACCAGCCTGGCACCATGCATGACCTGAAGCAGGGCCTGGGCCCATCAG
GAACTGATGGCCCACGGAAATTGACCTACAATAAATACAAACTCAAGGATTCGGTCTACATCTTCCGGGA
AGGGGCTCTGCCACCCTATCGACAGATGTTCTACCAGCTGTGTGATTTGAATGTGGAGGAGTTGCAGAAA
ATTGTTCACCGAAACGATGGGACAGAGACTGTGTGCACAGAGAGAGATGGGTGGTGCCTCCCCAAGACCA
CAGATCACCTGAGAGACACCATGTCACTCATGATTCTACAGACCATCCGCTCTGAGAGGCCTGGTAAGGC
TGATCGTGGGAAAGAGCAGCTGATGTTTGAATCTGGAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAA
GAGGAGGAGGAGGATTTCAAGCCCTCAGATGGGAGCGAGAATGAGATGGAGACAGAGATTCTGGATTACG
TGTGA

Translation (514 aa):
MAAAEPDADPKAAIPVDLRRERRLVCVEYPGVVRNEAKMLQTLGGEESVSRIYTDPTKRLELYFRPKDPY
CHPVCANRFSTSSLLLRIRKRTRRRRGVLGDEAHPQVTFNLEIIGIISTIYKFQGMSDFQYLAVHTEAGG
KHVSMYDRVLMRKPEKEEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPTISGENLIGLSRA
RRPHNAIFVNFEDTEVPEQPLEAAVQTWKKACTNPIDQKVEEELRKLFDIRPVWSRNAVKSNVSVHPDKL
KILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSRDMPVKAKRSTYNYSLP
ITVKKTSNQPGTMHDLKQGLGPSGTDGPRKLTYNKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
IVHRNDGTETVCTERDGWCLPKTTDHLRDTMSLMILQTIRSERPGKADRGKEQLMFESGEEEEEEEEEEE
EEEEDFKPSDGSENEMETEILDYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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