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Report for CCDS20816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20816.1 Public Mus musculus 7 Zscan22 23 108 98 CCDS HistoryNCBI Gene:232878Re-query CCDS DB by CCDS ID:20816.1Re-query CCDS DB by GeneID:232878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055528.10 ENSMUSP00000057651.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055528.10Link to Ensembl Protein Viewer:ENSMUSP00000057651.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055528Re-query CCDS DB by Protein ID:ENSMUSP00000057651
Original member Current member EBI ENSMUST00000120809.1 ENSMUSP00000113314.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120809.1Link to Ensembl Protein Viewer:ENSMUSP00000113314.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120809Re-query CCDS DB by Protein ID:ENSMUSP00000113314
Original member Current member NCBI NM_001001447.3 NP_001001447.1 Accepted alive Link to Nucleotide Sequence:NM_001001447.3Link to Protein Sequence:NP_001001447.1Re-query CCDS DB by Nucleotide ID:NM_001001447Re-query CCDS DB by Protein ID:NP_001001447Link to BLAST:NP_001001447.1
Original member Current member NCBI NM_001290436.1 NP_001277365.1 Accepted alive Link to Nucleotide Sequence:NM_001290436.1Link to Protein Sequence:NP_001277365.1Re-query CCDS DB by Nucleotide ID:NM_001290436Re-query CCDS DB by Protein ID:NP_001277365Link to BLAST:NP_001277365.1
Original member Current member NCBI NM_001290438.1 NP_001277367.1 Accepted alive Link to Nucleotide Sequence:NM_001290438.1Link to Protein Sequence:NP_001277367.1Re-query CCDS DB by Nucleotide ID:NM_001290438Re-query CCDS DB by Protein ID:NP_001277367Link to BLAST:NP_001277367.1

Chromosomal Locations for CCDS 20816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12903683 12904085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12906234 12907321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCCATCCCCAAGAGCCCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTTCAGGTGAAGGTGA
AAGAGGAGGAAGAAGCTAGCGACTCCCCGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGC
TGCACGATTGCGCTTCAGGCACTTCCGCTATGAGGAGGCATCCAGCCCTCATCAGGCGCTAGCCCAACTG
CGAGAGCTATGTTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGC
TGGAGCAGTTCCTGGGTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGG
AAAGGAGGCTGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAGGATGGGAGCCAGGAGTG
GAACGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAAAAATGGCGACTGAAA
CTGTCATGGGAAGCGTTTTGCCAAAATCTACCCTTGCCCACACTTGTAAACCTGAGAGCCACTCAGAGAG
CCAGCCAGAATTCCTAGGAGCACTCTGGATGAAGTCTACTGCCCAAGAGATGGATTTCAGAAAAGCTCTG
GGGCCTCACATGGATGCCCCCAAAGACCAGCCTGGCCATGAGTCTAACACCTCAGGAAACGGTTCCAACA
TGTGGCCCAACTTCCCTTCCCAAGACAAGGCTTCTTCAGAGGAGAAATTTGGCCCATTACTTGATAATGA
GACAGTGCCTCCAGATACTTGCTCAGAGAAGAAATCCTCCAAGGATAGTGAATGTTTGAAAACATTCCAG
AACACTTCAGCTCTGGAGGCCCACCAGAAGAGCCACTCTCAGAAGACGCCCTATGCCTGTACTGAGTGTG
GGAAGGTATTCAGTCGGAGCACCCACCTTGTCCAACACCAGGTTGTTCACACAGGAGCAAAGCCCCATGC
GTGTAAAGAGTGTGGTAAAGCCTTCAGTCGCGTTGCCCACCTGACACAGCACCTGAGGATTCATACTGGG
GAGAAGCCTTATAAATGTGAGGAATGTGGTAAAACCTTCAGCCGCAGCACCCACCTCACGCAGCACCAGC
GAGTACACACAGGCGAGCGGCCCTACGAGTGTGATACTTGCGGCAAAGCCTTCAGCCAGAGCACCCACCT
GACACAGCACCAGCGCATCCACACCGGGGAGAAGCCCTACAGGTGTGATGTGTGTGGGAAAGCCTTCAGT
GACTGTTCAGCTCTGGTCCGGCACCTGAGAGTCCACTCTGGAGAGAAGCCTTATCAATGTAAGGACTGCC
CGAAGGCCTTCGCACAAAGCTCCTCCCTCATTGAGCACCAGCGCACTCACACAGGTGAAAAGCCTTATAA
ATGCAGTGACTGTGGGAAAGCTTTTAGCCGCAGCTCAGCTCTCATGGTGCACCTAAAGATCCATATCACC
GTGACTCGAAGCACCCCTTAG

Translation (496 aa):
MAIPKSPLSPVLWEQDSFLQVKVKEEEEASDSPSQESSPSFTAHPEAARLRFRHFRYEEASSPHQALAQL
RELCCQWLRPESSSKEQMLELLVLEQFLGALPPEIQAWVGAQCPKSGKEAAVLVEDMTQLLDRRGWEPGV
EREEASCKQSNTDELEPPKMATETVMGSVLPKSTLAHTCKPESHSESQPEFLGALWMKSTAQEMDFRKAL
GPHMDAPKDQPGHESNTSGNGSNMWPNFPSQDKASSEEKFGPLLDNETVPPDTCSEKKSSKDSECLKTFQ
NTSALEAHQKSHSQKTPYACTECGKVFSRSTHLVQHQVVHTGAKPHACKECGKAFSRVAHLTQHLRIHTG
EKPYKCEECGKTFSRSTHLTQHQRVHTGERPYECDTCGKAFSQSTHLTQHQRIHTGEKPYRCDVCGKAFS
DCSALVRHLRVHSGEKPYQCKDCPKAFAQSSSLIEHQRTHTGEKPYKCSDCGKAFSRSSALMVHLKIHIT
VTRSTP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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