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Report for CCDS30188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30188.1 Public Mus musculus X Gabrq 23 108 98 CCDS HistoryNCBI Gene:57249Re-query CCDS DB by CCDS ID:30188.1Re-query CCDS DB by GeneID:57249See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033711.5 ENSMUSP00000033711.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033711.5Link to Ensembl Protein Viewer:ENSMUSP00000033711.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033711Re-query CCDS DB by Protein ID:ENSMUSP00000033711
Original member Current member NCBI NM_020488.2 NP_065234.1 Accepted alive Link to Nucleotide Sequence:NM_020488.2Link to Protein Sequence:NP_065234.1Re-query CCDS DB by Nucleotide ID:NM_020488Re-query CCDS DB by Protein ID:NP_065234Link to BLAST:NP_065234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065234.1 638 Q9JLF1 638 100% 0 0

Chromosomal Locations for CCDS 30188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72825456 72825604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72827550 72827638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72831657 72831724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72833208 72833428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72835093 72835175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72835657 72835791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72836156 72836308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72836801 72837057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72837720 72838481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGGCATCCGAGGTATGCTGCGAGCCGCTGCGCTCCTGCTGCTCATTAGGACTTGGCTGGCAGAGAGTA
ACGGCCCCAGTCCCACCCCGAAATTCCACTTCGAGCTCTCCTCCAGCACGCCTGAAGTCATTCTGGATCT
CTTCAACTGCAAAAACTGTGCAAATGAAGCTGTGGTTCAAAAGATTTTGGACAGGGTGCTGTCAACATAT
GATGTCCGACTTAGACCAAATTTTGGAGGAGCTCCTGTGCCTGTGTCAGTATCTATCTATGTGTCCAGTA
TTGAACAGATCTCAGAAATAAATATGGACTATACAATCACAATGTTTTTGCATCAGACCTGGAAGGACAC
ACGCTTAGCTTACTATGAAACCAACCTAAACCTGACCCTGGATTATCGGATGCATGAGAAGCTCTGGGTT
CCTGACTGCTACTTTGTGAATAGCAAAGATGCCTTTGTGCATGATGTAACTGTGGAGAATCGTGTATTTC
AACTTCACCCAGATGGGACAGTGCGATATGGCATCCGACTTACCACAACAGCAGCCTGTTCCCTGGATCT
GCAAAAATTCCCTATGGACAAACAATCCTGCAAGCTGGAGGTGGAGAGCTATGGCTACACTGTCGAAGAC
ATTGTGTTATCCTGGGAAGATGATAATGCCATCCACATTACTGATGGGCTGCATATCCCTCAGTACACGT
ACCTGGGGAGAACAATTACCAGCAAGGAAGTGTACTTCTACACAGGCTCCTACATGCGCCTGATAGTGAA
GTTCCAGGTTCAGAGGGAAGTCCGCAGTTACCTTGTGCAGGTCTATTGGCCCACGGTCCTCACCACCATT
CTCTCCTGGATATCATTTTGGATGAACTATGATTCCTCTGCAGCCAGGGTAACTATTGGACTAACTTCGA
TCCTTGTCCTGACTACCATCGACTCACATATGCGGGATAAACTCCCCCATATTTCCTGTATCAAAGCTAT
TGACATCTACATCCTTGTATGCCTATTCTTCGTTTTCCTGTCACTGCTGGAGTATGTCTACATCAACTAC
CTTTTCTTCAGCCAAGTACCTCGGCGTAATCACAGAAGATGCAGGAAACCCAGGAGAGTTGTTGCCCGAT
ACCGCTACCAAGAAGTGGTGGTAGCAAATGTGCAGGATGGCCTGATTAATGTGGAAGACAGAGTAGAAGA
CAGAGCTGGTCCCCTTCCTGACAGCCCCATGCAGGCTCATCTGGCAAGCCAGGAAAGTCTAGGATCCTTG
GTGTTCACATCAGAGCAGGCCCAGCTGGCTACCTCAGAAAGTCTCAGTCTACTCTCTTCTGCCTCAAGCC
AGACTCAATTGGCCACTGGAGAAAGCCTGAGTGATCTGCCCTCCACCTCTGAGCAAACAGTGCCTGAGTG
TACCATTCACTTTCATGGCTTTCTTACTAATGACAGTATTATCCCCATCAAAATCCACAGCCGATCTGAT
GCCTGTGATGATGAAGACTCCGAAGAAAGCCTAAGCTCTGAGGAGAGCCATGGCCATGGAAGCAGCCACA
CTGGAAGGCTCAAGCTCCAGATTAGCCAGAGGTGTGTGCAAGAAGCAAGTTGGGACCTTGATAAAATTGA
GATCTTACAGGATGACATCAGTATCACGAGCAGCTGGCTTGGCCTTGATGAACAATGCAAGGGGGATGCT
GACAGTATCTGGAGCCTTACTGATGAGGAGCTCATGGCCTGTGACCAAGAGAAGGACAGTAGCTCAGAGT
CTGAGGAGAATTGCTCCCCAAGCCCTGGGTGCTCCTTCAATGAAGGGTTCTCTTTTCAGCTCTTTAAACC
TAACCGGGTCCCCAAGGTTGATAGATGGTCCCGTTTCCTCTTTCCTCTTTCCTTTGGGCTGTTCAATGTG
GTTTACTGGTTATACCATGTCTATTAG

Translation (638 aa):
MGIRGMLRAAALLLLIRTWLAESNGPSPTPKFHFELSSSTPEVILDLFNCKNCANEAVVQKILDRVLSTY
DVRLRPNFGGAPVPVSVSIYVSSIEQISEINMDYTITMFLHQTWKDTRLAYYETNLNLTLDYRMHEKLWV
PDCYFVNSKDAFVHDVTVENRVFQLHPDGTVRYGIRLTTTAACSLDLQKFPMDKQSCKLEVESYGYTVED
IVLSWEDDNAIHITDGLHIPQYTYLGRTITSKEVYFYTGSYMRLIVKFQVQREVRSYLVQVYWPTVLTTI
LSWISFWMNYDSSAARVTIGLTSILVLTTIDSHMRDKLPHISCIKAIDIYILVCLFFVFLSLLEYVYINY
LFFSQVPRRNHRRCRKPRRVVARYRYQEVVVANVQDGLINVEDRVEDRAGPLPDSPMQAHLASQESLGSL
VFTSEQAQLATSESLSLLSSASSQTQLATGESLSDLPSTSEQTVPECTIHFHGFLTNDSIIPIKIHSRSD
ACDDEDSEESLSSEESHGHGSSHTGRLKLQISQRCVQEASWDLDKIEILQDDISITSSWLGLDEQCKGDA
DSIWSLTDEELMACDQEKDSSSESEENCSPSPGCSFNEGFSFQLFKPNRVPKVDRWSRFLFPLSFGLFNV
VYWLYHVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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