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Report for CCDS11987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11987.1 Public Homo sapiens 18 SERPINB3 24 110 108 CCDS HistoryNCBI Gene:6317Re-query CCDS DB by CCDS ID:11987.1Re-query CCDS DB by GeneID:6317See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283752.10 ENSP00000283752.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283752.10Link to Ensembl Protein Viewer:ENSP00000283752.5Re-query CCDS DB by Nucleotide ID:ENST00000283752Re-query CCDS DB by Protein ID:ENSP00000283752
Original member Current member NCBI NM_006919.3 NP_008850.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006919.3Link to Protein Sequence:NP_008850.1Re-query CCDS DB by Nucleotide ID:NM_006919Re-query CCDS DB by Protein ID:NP_008850Link to BLAST:NP_008850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008850.1 390 P29508-1 390 100% 0 0

Chromosomal Locations for CCDS 11987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63655657 63656061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63656831 63656986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63657270 63657412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63658513 63658630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63659399 63659527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63660800 63660856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63661052 63661216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAATTCACTCAGTGAAGCCAACACCAAGTTCATGTTCGACCTGTTCCAACAGTTCAGAAAATCAAAAG
AGAACAACATCTTCTATTCCCCTATCAGCATCACATCAGCATTAGGGATGGTCCTCTTAGGAGCCAAAGA
CAACACTGCACAACAGATTAAGAAGGTTCTTCACTTTGATCAAGTCACAGAGAACACCACAGGAAAAGCT
GCAACATATCATGTTGATAGGTCAGGAAATGTTCATCACCAGTTTCAAAAGCTTCTGACTGAATTCAACA
AATCCACTGATGCATATGAGCTGAAGATCGCCAACAAGCTCTTCGGAGAAAAAACGTATCTATTTTTACA
GGAATATTTAGATGCCATCAAGAAATTTTACCAGACCAGTGTGGAATCTGTTGATTTTGCAAATGCTCCA
GAAGAAAGTCGAAAGAAGATTAACTCCTGGGTGGAAAGTCAAACGAATGAAAAAATTAAAAACCTAATTC
CTGAAGGTAATATTGGCAGCAATACCACATTGGTTCTTGTGAACGCAATCTATTTCAAAGGGCAGTGGGA
GAAGAAATTTAATAAAGAAGATACTAAAGAGGAAAAATTTTGGCCAAACAAGAATACATACAAGTCCATA
CAGATGATGAGGCAATACACATCTTTTCATTTTGCCTCGCTGGAGGATGTACAGGCCAAGGTCCTGGAAA
TACCATACAAAGGCAAAGATCTAAGCATGATTGTGTTGCTGCCAAATGAAATCGATGGTCTCCAGAAGCT
TGAAGAGAAACTCACTGCTGAGAAATTGATGGAATGGACAAGTTTGCAGAATATGAGAGAGACACGTGTC
GATTTACACTTACCTCGGTTCAAAGTGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAA
TGGTGGATATCTTCAATGGGGATGCAGACCTCTCAGGCATGACCGGGAGCCGCGGTCTCGTGCTATCTGG
AGTCCTACACAAGGCCTTTGTGGAGGTTACAGAGGAGGGAGCAGAAGCTGCAGCTGCCACCGCTGTAGTA
GGATTCGGATCATCACCTACTTCAACTAATGAAGAGTTCCATTGTAATCACCCTTTCCTATTCTTCATAA
GGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCGTAG

Translation (390 aa):
MNSLSEANTKFMFDLFQQFRKSKENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHFDQVTENTTGKA
ATYHVDRSGNVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFANAP
EESRKKINSWVESQTNEKIKNLIPEGNIGSNTTLVLVNAIYFKGQWEKKFNKEDTKEEKFWPNKNTYKSI
QMMRQYTSFHFASLEDVQAKVLEIPYKGKDLSMIVLLPNEIDGLQKLEEKLTAEKLMEWTSLQNMRETRV
DLHLPRFKVEESYDLKDTLRTMGMVDIFNGDADLSGMTGSRGLVLSGVLHKAFVEVTEEGAEAAAATAVV
GFGSSPTSTNEEFHCNHPFLFFIRQNKTNSILFYGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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