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Report for CCDS4119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4119.1 Public Homo sapiens 5 TICAM2 24 110 108 CCDS HistoryNCBI Gene:353376Re-query CCDS DB by CCDS ID:4119.1Re-query CCDS DB by GeneID:353376See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4119.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427199.3 ENSP00000415139.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427199.3Link to Ensembl Protein Viewer:ENSP00000415139.3Re-query CCDS DB by Nucleotide ID:ENST00000427199Re-query CCDS DB by Protein ID:ENSP00000415139
Original member Current member NCBI NM_021649.7 NP_067681.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021649.7Link to Protein Sequence:NP_067681.1Re-query CCDS DB by Nucleotide ID:NM_021649Re-query CCDS DB by Protein ID:NP_067681Link to BLAST:NP_067681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067681.1 235 Q86XR7-1 235 100% 0 0

Chromosomal Locations for CCDS 4119.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115580549 115581256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGGTATCGGGAAGTCTAAAATAAATTCCTGCCCTCTTTCTCTCTCTTGGGGTAAAAGGCACAGTGTGG
ATACAAGTCCAGGATATCATGAGTCAGATTCCAAGAAGTCTGAAGATCTATCCTTGTGTAATGTTGCTGA
GCACAGCAATACAACAGAGGGGCCAACAGGAAAGCAGGAGGGAGCTCAGAGCGTGGAAGAGATGTTTGAA
GAAGAAGCTGAAGAAGAGGTGTTCCTCAAATTTGTGATATTGCATGCAGAAGATGACACAGATGAAGCCC
TCAGAGTCCAGAATCTGCTACAAGATGACTTTGGTATCAAACCCGGAATAATCTTTGCTGAGATGCCATG
TGGCAGACAGCATTTACAGAATTTAGATGATGCTGTAAATGGGTCTGCATGGACAATCTTATTACTGACT
GAAAACTTTTTAAGAGATACTTGGTGTAATTTCCAGTTCTATACGTCCCTAATGAACTCCGTTAACAGGC
AGCATAAATACAACTCTGTTATACCCATGCGGCCCCTGAACAATCCCCTTCCCCGAGAAAGGACTCCCTT
TGCCCTCCAAACCATCAATGCCTTAGAGGAAGAAAGTCGTGGATTTCCTACACAAGTAGAAAGAATTTTT
CAGGAGTCTGTGTATAAGACACAACAAACTATATGGAAAGAGACAAGAAATATGGTACAAAGACAATTTA
TTGCCTGA

Translation (235 aa):
MGIGKSKINSCPLSLSWGKRHSVDTSPGYHESDSKKSEDLSLCNVAEHSNTTEGPTGKQEGAQSVEEMFE
EEAEEEVFLKFVILHAEDDTDEALRVQNLLQDDFGIKPGIIFAEMPCGRQHLQNLDDAVNGSAWTILLLT
ENFLRDTWCNFQFYTSLMNSVNRQHKYNSVIPMRPLNNPLPRERTPFALQTINALEEESRGFPTQVERIF
QESVYKTQQTIWKETRNMVQRQFIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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