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Report for CCDS51868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51868.1 Public Mus musculus 6 Sumf1 23 108 98 CCDS HistoryNCBI Gene:58911Re-query CCDS DB by CCDS ID:51868.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032191.15 ENSMUSP00000032191.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032191.15Link to Ensembl Protein Viewer:ENSMUSP00000032191.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032191Re-query CCDS DB by Protein ID:ENSMUSP00000032191
Original member NCBI NM_145937.3 NP_666049.2 Updated not alive Link to Nucleotide Sequence:NM_145937.3Link to Protein Sequence:NP_666049.2Re-query CCDS DB by Nucleotide ID:NM_145937Re-query CCDS DB by Protein ID:NP_666049
Current member NCBI NM_145937.4 NP_666049.2 Accepted alive Link to Nucleotide Sequence:NM_145937.4Link to Protein Sequence:NP_666049.2Re-query CCDS DB by Nucleotide ID:NM_145937Re-query CCDS DB by Protein ID:NP_666049Link to BLAST:NP_666049.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666049.2 372 Q8R0F3 372 100% 0 0

Chromosomal Locations for CCDS 51868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 108108476 108108586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108118620 108118679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108144591 108144704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108152227 108152341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108153113 108153235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108154959 108155041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108173356 108173430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108175988 108176161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108185293 108185556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCTGCGCCCGCGCGAGAGCCGGCTCTCCGCTGCTGCATCAGACTGGCGCGAGTCTTCTTGCTGCTGG
TGTTGGCGTGCGAGGTGGCGGGAAGCGATGAGGCCGAGGCCAGGGAAGGTGCGGCGTCCCTTGCGGGCTC
GTGCGGCTGCGGAACGCCCCAGAGGGCCGGGGCCCATGGCAGCTCGGCGGCGGCGCAGCGCTACTCCCGG
GAGGCGAACGCCCCGGGCCTGACCTCAGGCCCGCGACCGCTCGCGCTCACCAAGATGGTCCCCATTCCTG
CTGGAGTATTCACAATGGGCACTGATGATCCTCAGATCAGGCAGGATGGAGAAGCCCCTGCCAGGAGAGT
CACTGTTGATGGCTTTTACATGGACGCCTATGAAGTCAGCAATGCGGATTTTGAGAAGTTTGTGAACTCG
ACTGGCTATTTGACAGAGGCTGAGAAGTTTGGAGACTCTTTCGTCTTTGAAGGCATGTTGAGCGAGCAAG
TGAAAACGCATATCCACCAGGCAGTTGCAGCTGCTCCATGGTGGTTGCCTGTCAAGGGAGCTAATTGGAG
ACACCCAGAGGGTCCGGACTCCAGTATTCTGCACAGGTCAAATCATCCGGTTCTCCATGTTTCCTGGAAC
GATGCTGTTGCCTACTGCACATGGGCGGGCAAGAGGTTGCCTACTGAGGCAGAGTGGGAATACAGCTGTA
GAGGAGGCCTGCAGAACAGGCTTTTCCCCTGGGGCAACAAACTGCAGCCCAAAGGACAGCATTATGCCAA
CATCTGGCAGGGCAAGTTTCCTGTGAGCAACACTGGCGAGGATGGCTTCCAAGGAACTGCCCCCGTTGAT
GCCTTTCCTCCCAATGGCTATGGCTTATACAACATAGTGGGGAATGTGTGGGAGTGGACCTCAGACTGGT
GGACTGTTCACCATTCTGTTGAGGAAACGTTCAACCCAAAGGGTCCCACTTCTGGGAAAGACCGAGTGAA
GAAGGGTGGATCCTACATGTGCCATAAGTCCTATTGCTATAGGTACCGCTGTGCAGCTCGAAGCCAGAAC
ACACCAGATAGCTCTGCATCCAACCTGGGATTCCGATGTGCAGCCGACCACCTGCCCACCGCAGACTGA

Translation (372 aa):
MAAPAREPALRCCIRLARVFLLLVLACEVAGSDEAEAREGAASLAGSCGCGTPQRAGAHGSSAAAQRYSR
EANAPGLTSGPRPLALTKMVPIPAGVFTMGTDDPQIRQDGEAPARRVTVDGFYMDAYEVSNADFEKFVNS
TGYLTEAEKFGDSFVFEGMLSEQVKTHIHQAVAAAPWWLPVKGANWRHPEGPDSSILHRSNHPVLHVSWN
DAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGKFPVSNTGEDGFQGTAPVD
AFPPNGYGLYNIVGNVWEWTSDWWTVHHSVEETFNPKGPTSGKDRVKKGGSYMCHKSYCYRYRCAARSQN
TPDSSASNLGFRCAADHLPTAD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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