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Report for CCDS79907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79907.1 Public Mus musculus 3 Ccdc169 23 108 98 CCDS HistoryNCBI Gene:320604Re-query CCDS DB by CCDS ID:79907.1Re-query CCDS DB by GeneID:320604See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052904.10 ENSMUSP00000049698.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052904.10Link to Ensembl Protein Viewer:ENSMUSP00000049698.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052904Re-query CCDS DB by Protein ID:ENSMUSP00000049698
Original member Current member NCBI NM_001290138.1 NP_001277067.1 Accepted alive Link to Nucleotide Sequence:NM_001290138.1Link to Protein Sequence:NP_001277067.1Re-query CCDS DB by Nucleotide ID:NM_001290138Re-query CCDS DB by Protein ID:NP_001277067Link to BLAST:NP_001277067.1
Original member Current member NCBI NM_001290141.1 NP_001277070.1 Accepted alive Link to Nucleotide Sequence:NM_001290141.1Link to Protein Sequence:NP_001277070.1Re-query CCDS DB by Nucleotide ID:NM_001290141Re-query CCDS DB by Protein ID:NP_001277070Link to BLAST:NP_001277070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277067.1 132 Q8BXX9-2 132 100% 0 0
NP_001277070.1 132 Q8BXX9-2 132 100% 0 0

Chromosomal Locations for CCDS 79907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 55150795 55150822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55150905 55150945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55157033 55157131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55158545 55158598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55163321 55163397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55171265 55171364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGAAAAGATGCGTGGAAACCCTTCAGATAGACTGTCTTCCATTCGTGTCTATGAGAAGATGCCAGTGG
AATCTTTAAACGTATTACTTAAACAACTAGAAAAAGAAAAAAGGAGTCTCGAAAGCCAAGTGAAAGAATA
TGCGTTTAGACTGGAGCAGGAGTCAAAGGCATACCACAGGACCAACAATGAGCGCCGTTCCTACATCGCG
GAAATGACTCAGGTTTCTGGCTCAAATCAAGTATCCAAGAGGCAACAGATGGACCCACTGCCTAGAATGA
AGGAAAGTCCGGTGAAAACTGGAAGACACAATTCCATGAATCAGAAGACAACAAATGCCAAGAAAGGACC
AGTTAAAAAGGTTCCAAGATCAAACCATCTTCCAAAACTCAACCCGTGA

Translation (132 aa):
MEKMRGNPSDRLSSIRVYEKMPVESLNVLLKQLEKEKRSLESQVKEYAFRLEQESKAYHRTNNERRSYIA
EMTQVSGSNQVSKRQQMDPLPRMKESPVKTGRHNSMNQKTTNAKKGPVKKVPRSNHLPKLNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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