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Report for CCDS39316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39316.1 Public Mus musculus 5 Mlxipl 23 108 98 CCDS HistoryNCBI Gene:58805Re-query CCDS DB by CCDS ID:39316.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005507.9 ENSMUSP00000005507.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005507.9Link to Ensembl Protein Viewer:ENSMUSP00000005507.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000005507Re-query CCDS DB by Protein ID:ENSMUSP00000005507
Original member Current member NCBI NM_021455.5 NP_067430.2 Accepted alive Link to Nucleotide Sequence:NM_021455.5Link to Protein Sequence:NP_067430.2Re-query CCDS DB by Nucleotide ID:NM_021455Re-query CCDS DB by Protein ID:NP_067430Link to BLAST:NP_067430.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067430.2 864 Q99MZ3-1 864 100% 0 0

Chromosomal Locations for CCDS 39316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135106923 135107215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135113627 135113733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135121506 135121588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135121736 135121825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135122070 135122114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135123650 135123851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135123937 135124017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135128513 135128697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135132315 135132861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135133109 135133176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135133252 135133408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135133544 135133659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135133754 135133873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135133994 135134121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135134487 135134610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135135351 135135480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135137242 135137360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGCGCGCGCGCTGGCGGATCTATCCGTGAACTTGCAGGTCCCCCGGGTCGTCCCTAGCCCGGACTCGG
ACTCGGATACGGACTTGGAGGATCCGAGTCCCCGGCGCAGCGCGGGTGGCCTGCATCGATCACAGGTCAT
CCACAGCGGACACTTCATGGTGTCTTCGCCGCACAGCGACTCGCTGACCCGGCGACGCGACCAGGAGGGG
CCCGTGGGGCTCGCCGACTTCGGGCCGCGCAGCATCGATCCGACACTCACCCACCTCTTCGAGTGCTTGA
GCCTGGCTTACAGTGGCAAGCTGGTCTCTCCCAAGTGGAAGAACTTCAAAGGCCTCAAGTTGCTATGCCG
GGACAAGATCCGGCTGAACAACGCCATCTGGAGAGCCTGGTACATTCAGTATGTGCAACGGAGGAAGAGC
CCAGTGTGTGGTTTCGTGACCCCTCTGCAGGGGTCTGAAGCAGATGAGCACCGGAAACCTGAGGCTGTCA
TCCTGGAGGGTAATTACTGGAAGCGGCGCATCGAGGTGGTGATGCGCGAATACCACAAGTGGAGAATCTA
CTACAAAAAGCGGCTCCGTAAGTCCAGCAGGGAAGGGGATTTCCTGGCTCCCAAGCAGGTGGAAGGTGGG
TGGCCGCCACCAGAGCGATGGTGCGAACAGCTCTTCTCCAGCGTGGTGCCTGTGCTGCTTGGGGGCTCCG
AGGAGGAGCCTGGGGGCCGGCAGCTTCTAGACCTGGACTGCTTCTTGTCCGATATCTCCGACACACTCTT
CACCATGACACAGCCCAGTCCTTCGTCCCTGCAGCTGCCCCCAGAAGATGCTTATGTTGGCAATGCTGAC
ATGATCCAGCCAGACCTGACGCCGCTGCAGCCCAGCCTAGATGACTTCATGGAGATATCAGATTTCTTCA
CCAATTACCGCCCCCCTCAGACACCCACATCTTCAAACTACATAGAGTCCCCCAGCTTTGGCCCCATGGC
TGACTCCCTCTTCAGCAGTGGGATCCTGGCCCCAGAGATGCCATCTCCAGCCTCGTCTTCCTCCTCCTCA
GGGATGACCCCTCACTCAGGGAATACACGCCTACAGGCTCGGAACAGCTGCTCTGGACCCTTGGATCCCA
ACCCCTTTCTGAGCTCTGAATTCCTTCTTCCTGAAGACCCTAAGACCAAGATCCCACCTGCTCCTGGACC
GACCCCTCTCCTTCCATTCCCCACCCCTGTCAAGGTGCATGGCTTAGAGCCCTGCACCCCCTCTCCCTTC
CCCACAATGGCTCCGCCCCCCTCTTTGTTGCCAGAAGAATCTCTCCTCTCTGCCAGGTTCCCATTCACCT
CAGCCCCTCCTGCTCCAGGAGTGTCTACGCTTCCTGCACCCACAACCTTTGTCCCCACCCCACAGCCCGG
CCCTGGTCCCGTCCCCTTCTCTGTAGACCATCTGCCCCATGGGTACCTGGAACCCGTCTTTGGGCCTCAC
TTCACTGTGCCTCAGGGTATGCAACCCAGGTGCAAGCCCTCCTCCCCATCCCCTGGGGGACAAAAAGCAA
GTCCACCCACCTTGGCCTCTGCCACCGCCAGTCCCACTGCCACTGCCACTGCCAGAGACAACAACCCCTG
TCTTACACAGCTGCTCAGGGCAGCCAAGCCTGAGCAAGCACTGGAGCCTCCGACTATGCCCGGTACCCTC
CTCCGGCCTCCAGAGTCCCCGCAGGATACAGTTTCTGAAATCCCCCGTGCCCGTGCCTTTTTCCCCCCAA
TCCCGGCCCCTACACCACCCCGGCCACCTCCAGGCCCAGCCACATTGGCTCCTCCCAGGTCCCTGGTTGT
CCCCAAAGCAGAGCGGCTCTCGCCTCCAGCCTCCAGCGGCAGTGAGCGGCGACTATCAGGGGATCTCAAC
TCCATACAACCCTCGGGGGCACTGAGTGTCCACCTGTCTCCCCCTCAAACTGTCCTAAGCCGGGGTCGTG
TAGACAACAACAAGATGGAGAACCGACGTATCACACACATCTCCGCGGAGCAGAAGAGGCGGTTCAATAT
TAAGCTAGGATTCGACACCCTGCACGGACTTGTCAGCACGCTCAGTGCCCAGCCCAGCCTCAAGGTGAGC
AAAGCAACCACGCTTCAGAAGACAGCGGAGTACATCCTGATGCTGCAGCAGGAACGGGCAGCTATGCAGG
AGGAGGCGCAGCAGCTGCGGGATGAAATAGAGGAGCTCAACGCTGCCATCAACTTGTGCCAGCAGCAGCT
ACCGGCCACCGGGGTGCCCATCACACATCAGCGCTTTGACCAGATGCGGGACATGTTTGATGACTATGTC
CGGACGCGCACGCTGCACAACTGGAAGTTCTGGGTGTTCAGCATCCTCATCCGACCTTTATTTGAATCCT
TCAATGGGATGGTGTCTACCGCCAGCTTGCACAGCCTCCGCCAGACCTCACTGGCCTGGCTGGAACAGTA
CTGTTCCCTACCTGCTCTCCGGCCAACTGTCCTGAATTCCCTTCGCCAACTCAGCACTTCCACAAGCATC
CTGACTGACCCCAGCCTTGTGCCTGAGCAAGCCACACGGGCAGTCACAGAGGGCACCCTGGGGAGACCAT
TATAA

Translation (864 aa):
MARALADLSVNLQVPRVVPSPDSDSDTDLEDPSPRRSAGGLHRSQVIHSGHFMVSSPHSDSLTRRRDQEG
PVGLADFGPRSIDPTLTHLFECLSLAYSGKLVSPKWKNFKGLKLLCRDKIRLNNAIWRAWYIQYVQRRKS
PVCGFVTPLQGSEADEHRKPEAVILEGNYWKRRIEVVMREYHKWRIYYKKRLRKSSREGDFLAPKQVEGG
WPPPERWCEQLFSSVVPVLLGGSEEEPGGRQLLDLDCFLSDISDTLFTMTQPSPSSLQLPPEDAYVGNAD
MIQPDLTPLQPSLDDFMEISDFFTNYRPPQTPTSSNYIESPSFGPMADSLFSSGILAPEMPSPASSSSSS
GMTPHSGNTRLQARNSCSGPLDPNPFLSSEFLLPEDPKTKIPPAPGPTPLLPFPTPVKVHGLEPCTPSPF
PTMAPPPSLLPEESLLSARFPFTSAPPAPGVSTLPAPTTFVPTPQPGPGPVPFSVDHLPHGYLEPVFGPH
FTVPQGMQPRCKPSSPSPGGQKASPPTLASATASPTATATARDNNPCLTQLLRAAKPEQALEPPTMPGTL
LRPPESPQDTVSEIPRARAFFPPIPAPTPPRPPPGPATLAPPRSLVVPKAERLSPPASSGSERRLSGDLN
SIQPSGALSVHLSPPQTVLSRGRVDNNKMENRRITHISAEQKRRFNIKLGFDTLHGLVSTLSAQPSLKVS
KATTLQKTAEYILMLQQERAAMQEEAQQLRDEIEELNAAINLCQQQLPATGVPITHQRFDQMRDMFDDYV
RTRTLHNWKFWVFSILIRPLFESFNGMVSTASLHSLRQTSLAWLEQYCSLPALRPTVLNSLRQLSTSTSI
LTDPSLVPEQATRAVTEGTLGRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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