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Report for CCDS1575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1575.1 Public Homo sapiens 1 RHOU 24 110 108 CCDS HistoryNCBI Gene:58480Re-query CCDS DB by CCDS ID:1575.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366691.4 ENSP00000355652.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366691.4Link to Ensembl Protein Viewer:ENSP00000355652.3Re-query CCDS DB by Nucleotide ID:ENST00000366691Re-query CCDS DB by Protein ID:ENSP00000355652
Original member Current member NCBI NM_021205.6 NP_067028.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021205.6Link to Protein Sequence:NP_067028.1Re-query CCDS DB by Nucleotide ID:NM_021205Re-query CCDS DB by Protein ID:NP_067028Link to BLAST:NP_067028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067028.1 258 Q7L0Q8-1 258 100% 0 0

Chromosomal Locations for CCDS 1575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228735743 228736004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228737673 228737731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228743285 228743740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCCCCCGCAGCAGGGGGACCCCGCGTTCCCCGACCGCTGCGAGGCGCCTCCGGTGCCGCCGCGTCGGG
AGCGCGGTGGACGCGGGGGACGCGGGCCTGGGGAGCCGGGGGGCCGGGGGCGTGCGGGGGGTGCCGAGGG
GCGCGGCGTCAAGTGCGTGCTGGTCGGCGACGGCGCGGTGGGCAAGACGAGCCTGGTGGTGAGCTACACC
ACCAACGGCTACCCCACCGAGTACATCCCTACTGCCTTCGACAACTTCTCCGCGGTGGTGTCTGTGGATG
GGCGGCCCGTGAGACTCCAACTCTGTGACACTGCCGGACAGGATGAATTTGACAAGCTGAGGCCTCTCTG
CTACACCAACACAGACATCTTCCTGCTCTGCTTCAGTGTCGTGAGCCCCTCATCCTTCCAGAACGTCAGT
GAGAAATGGGTGCCGGAGATTCGATGCCACTGTCCCAAAGCCCCCATCATCCTAGTTGGAACGCAGTCGG
ATCTCAGAGAAGATGTCAAAGTCCTCATTGAGTTGGACAAATGCAAAGAAAAGCCAGTGCCTGAAGAGGC
GGCTAAGCTGTGCGCCGAGGAAATCAAAGCCGCCTCCTACATCGAGTGTTCAGCCTTGACTCAAAAAAAC
CTCAAAGAGGTCTTTGATGCAGCCATCGTCGCTGGCATTCAATACTCGGACACTCAGCAACAGCCAAAGA
AGTCTAAAAGCAGGACTCCAGATAAAATGAAAAACCTCTCCAAGTCCTGGTGGAAGAAGTACTGCTGTTT
CGTATGA

Translation (258 aa):
MPPQQGDPAFPDRCEAPPVPPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYT
TNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVS
EKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKN
LKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCFV


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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