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Report for CCDS88701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88701.1 Public Mus musculus 14 Egr3 23 108 98 CCDS HistoryNCBI Gene:13655Re-query CCDS DB by CCDS ID:88701.1Re-query CCDS DB by GeneID:13655See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035908.2 ENSMUSP00000037042.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035908.2Link to Ensembl Protein Viewer:ENSMUSP00000037042.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035908Re-query CCDS DB by Protein ID:ENSMUSP00000037042
Original member Current member NCBI NM_001289925.2 NP_001276854.1 Accepted alive Link to Nucleotide Sequence:NM_001289925.2Link to Protein Sequence:NP_001276854.1Re-query CCDS DB by Nucleotide ID:NM_001289925Re-query CCDS DB by Protein ID:NP_001276854Link to BLAST:NP_001276854.1

Chromosomal Locations for CCDS 88701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70078037 70078076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70078896 70079905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGGAGCCATGTGCGGCGTGGAGTCCCCACGGTGGGAGAGAGAATGTGATGGACATCGGTCTGACCAACG
AGAAGCCCAATCCGGAACTCTCTTATTCGAGCTCTTTCCAGCCAGCCCCCGGCAACAAGACCGTGACCTA
CTTGGGAAAGTTCGCTTTCGACTCTCCTTCCAACTGGTGCCAGGACAACATCATTAGCCTCATGAGTGCC
GGCATCTTGGGGGTGCCCCCGGCCTCAGGGGCGCTCAGTACGCAGACGTCCACGGCTAGCATGGTGCAGC
CTCCTCAGGGAGACGTGGAGGCCATGTATCCGGCGCTGCCTCCTTATTCCAACTGCGGCGATCTCTACTC
GGAGCCCGTGTCTTTCCACGACCCCCAGGGAAACCCTGGGCTCGCCTATTCCCCCCAGGATTACCAATCG
GCCAAGCCGGCCTTGGACAGCAATCTTTTCCCCATGATTCCTGACTACAACCTGTACCACCATCCCAACG
ACATGGGCTCCATTCCGGAACATAAGCCCTTCCAGGGCATGGACCCCATCCGGGTCAACCCACCCCCTAT
TACCCCACTGGAGACCATCAAGGCCTTCAAAGACAAGCAGATCCACCCGGGATTCGGCAGCCTGCCCCAA
CCGCCGCTCACTCTCAAGCCCATCCGGCCCCGCAAGTACCCCAATCGGCCTAGCAAGACCCCGCTCCACG
AGCGGCCCCACGCGTGTCCCGCGGAAGGCTGTGACCGCCGTTTCAGCCGCTCAGACGAGCTGACCCGGCA
CCTGCGCATCCACACGGGCCACAAGCCCTTCCAGTGTCGGATCTGCATGCGCAGCTTCAGCCGCAGCGAC
CACCTCACCACTCACATCCGCACGCACACCGGGGAGAAGCCCTTTGCCTGTGAGTTCTGTGGGCGCAAGT
TTGCGCGCAGCGACGAGCGCAAGCGCCACGCCAAGATCCACCTCAAGCAAAAGGAGAAGAAGTCGGAGAA
AGGGGGTGCGCCCTCTGCATCCTCGGCGCCCACCGTGTCCCTGGCCCCTGTGGTCACCACCTGCGCCTGA

Translation (349 aa):
MEPCAAWSPHGGRENVMDIGLTNEKPNPELSYSSSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSA
GILGVPPASGALSTQTSTASMVQPPQGDVEAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQS
AKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQ
PPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSD
HLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKSEKGGAPSASSAPTVSLAPVVTTCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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