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Report for CCDS26519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26519.1 Public Mus musculus 13 Nfil3 23 108 98 CCDS HistoryNCBI Gene:18030Re-query CCDS DB by CCDS ID:26519.1Re-query CCDS DB by GeneID:18030See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071065.7 ENSMUSP00000065363.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071065.7Link to Ensembl Protein Viewer:ENSMUSP00000065363.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071065Re-query CCDS DB by Protein ID:ENSMUSP00000065363
Original member Current member NCBI NM_017373.3 NP_059069.1 Accepted alive Link to Nucleotide Sequence:NM_017373.3Link to Protein Sequence:NP_059069.1Re-query CCDS DB by Nucleotide ID:NM_017373Re-query CCDS DB by Protein ID:NP_059069Link to BLAST:NP_059069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059069.1 462 O08750 462 100% 0 0

Chromosomal Locations for CCDS 26519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52967478 52968866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGCAGCTGAGAAAAATGCAGACCATCAAAAAGGAGCCCGCACCCCTAGATCCTACCAGCAGCTCAGACA
AGATGCTGCTGCTGAACTCTGCCTTAGCTGAGGTGGCCGAGGACCTAGCCTCAGGTGAAGATTTGCTCCT
GAACGAAGGGAGCATGGGGAAAAACAAATCCTCGGCGTGTCGGAGAAAACGGGAATTCATTCCGGACGAG
AAGAAAGACGCCATGTATTGGGAGAAACGGCGGAAAAACAACGAAGCTGCCAAAAGATCTCGGGAGAAGC
GCCGCCTCAATGACCTGGTTTTGGAGAACAAGCTGATCGCCCTGGGAGAAGAAAATGCCACTTTAAAAGC
TGAGCTGCTCTCCCTGAAATTAAAGTTTGGTTTAATTAGCTCCACGGCGTATGCCCAAGAAATCCAGAAA
CTCAGTAATTCCACAGCTGTCTACTTTCAGGACTACCAGACATCCAAGGCTGCCGTGAGCTCTTTTGTGG
ACGAGCATGAGCCTGCGATGGTAGCCGGAAGTTGCATCTCAGTCATCAAGCACTCTCCCCAGAGCTCGCT
CTCCGATGTGTCAGAGGTGTCCTCGGTGGAGCACACTCAGGAAAGCCCCGCACAGGGAGGCTGCCGGAGC
CCTGAGAACAAGTTCCCTGTGATCAAGCAGGAGCCCGTGGAGTTGGAGAGCTTTGCCAGGGAGGCCAGGG
AGGAGCGGGGCACGTATTCCACCTCCATCTACCAGAGCTACATGGGAAGCTCTTTCTCCACTTACTCCCA
CTCCCCACCCCTCTTGCAGGTCCATGGGTCCACTAGCAACTCCCCAAGAACCTCAGAGGCCGATGAGGGT
GTAGTGGGCAAGTCTTCTGATGGGGAAGACGAACAACAGGTCCCTAAGGGCCCCATCCATTCTCCAGTGG
AGCTGCAACGGGTCCACGCCACGGTGGTGAAGGTTCCGGAAGTGAACCCTTCTGCCTTACCGCACAAGCT
TCGGATTAAAGCCAAGGCCATGCAGGTCAAAGTGGAGGCTTTGGACAGCGAGTTTGAAGGCATGCAGAAA
CTCTCTTCACCCGCCGATGCGATCGCCAAAAGACATTTTGACCTGGAGAAACATGGAACCTCGGGTATGG
CCCATTCCTCCCTCCCTCCTTTCTCAGTGCAGGTGACGAACATTCAAGATTGGTCCCTCAAATCGGAACA
CTGGCATCACAAAGAACTGAGCAGCAAAACTCAGAGTAGCTTCAAAACAGGTGTGGTGGAAGTCAAAGAC
GGTGGCTATAAGGTTTCCGAAGCTGAGAATTTGTATTTGAAGCAGGGAATAGCAAACTTATCTGCAGAGG
TGGTCTCGCTCAAGAGATTCATAGCCACACAACCGATCTCGGCTTCGGACTCCAGGTAA

Translation (462 aa):
MQLRKMQTIKKEPAPLDPTSSSDKMLLLNSALAEVAEDLASGEDLLLNEGSMGKNKSSACRRKREFIPDE
KKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGEENATLKAELLSLKLKFGLISSTAYAQEIQK
LSNSTAVYFQDYQTSKAAVSSFVDEHEPAMVAGSCISVIKHSPQSSLSDVSEVSSVEHTQESPAQGGCRS
PENKFPVIKQEPVELESFAREAREERGTYSTSIYQSYMGSSFSTYSHSPPLLQVHGSTSNSPRTSEADEG
VVGKSSDGEDEQQVPKGPIHSPVELQRVHATVVKVPEVNPSALPHKLRIKAKAMQVKVEALDSEFEGMQK
LSSPADAIAKRHFDLEKHGTSGMAHSSLPPFSVQVTNIQDWSLKSEHWHHKELSSKTQSSFKTGVVEVKD
GGYKVSEAENLYLKQGIANLSAEVVSLKRFIATQPISASDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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