NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11052.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11052.2 Public Homo sapiens 17 CXCL16 24 110 108 CCDS HistoryNCBI Gene:58191Re-query CCDS DB by CCDS ID:11052.2See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11052.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293778.12 ENSP00000293778.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293778.12Link to Ensembl Protein Viewer:ENSP00000293778.7Re-query CCDS DB by Nucleotide ID:ENST00000293778Re-query CCDS DB by Protein ID:ENSP00000293778
Original member Current member EBI ENST00000574412.6 ENSP00000459592.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574412.6Link to Ensembl Protein Viewer:ENSP00000459592.2Re-query CCDS DB by Nucleotide ID:ENST00000574412Re-query CCDS DB by Protein ID:ENSP00000459592
Original member Current member NCBI NM_001100812.2 NP_001094282.2 Accepted alive Link to Nucleotide Sequence:NM_001100812.2Link to Protein Sequence:NP_001094282.2Re-query CCDS DB by Nucleotide ID:NM_001100812Re-query CCDS DB by Protein ID:NP_001094282Link to BLAST:NP_001094282.2
Original member Current member NCBI NM_001386809.1 NP_001373738.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386809.1Link to Protein Sequence:NP_001373738.1Re-query CCDS DB by Nucleotide ID:NM_001386809Re-query CCDS DB by Protein ID:NP_001373738Link to BLAST:NP_001373738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094282.2 254 Q9H2A7 254 100% 0 0
NP_001373738.1 254 Q9H2A7 254 100% 0 0

Chromosomal Locations for CCDS 11052.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4734606 4734652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4735092 4735508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4738408 4738490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4738782 4738920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4739261 4739339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGGACGGGACTTGCGGCCCGGGTCCCGCGTGCTCCTGCTCCTGCTTCTGCTCCTGCTGGTGTACCTGA
CTCAGCCAGGCAATGGCAACGAGGGCAGCGTCACTGGAAGTTGTTATTGTGGTAAAAGAATTTCTTCCGA
CTCCCCGCCATCGGTTCAGTTCATGAATCGTCTCCGGAAACACCTGAGAGCTTACCATCGGTGTCTATAC
TACACGAGGTTCCAGCTCCTTTCCTGGAGCGTGTGTGGGGGCAACAAGGACCCATGGGTTCAGGAATTGA
TGAGCTGTCTTGATCTCAAAGAATGTGGACATGCTTACTCGGGGATTGTGGCCCACCAGAAGCATTTACT
TCCTACCAGCCCCCCAATTTCTCAGGCCTCAGAGGGGGCATCTTCAGATATCCACACCCCTGCCCAGATG
CTCCTGTCCACCTTGCAGTCCACTCAGCGCCCCACCCTCCCAGTAGGATCACTGTCCTCGGACAAAGAGC
TCACTCGTCCCAATGAAACCACCATTCACACTGCGGGCCACAGTCTGGCAGCTGGGCCTGAGGCTGGGGA
GAACCAGAAGCAGCCGGAAAAAAATGCTGGTCCCACAGCCAGGACATCAGCCACAGTGCCAGTCCTGTGC
CTCCTGGCCATCATCTTCATCCTCACCGCAGCCCTTTCCTATGTGCTGTGCAAGAGGAGGAGGGGGCAGT
CACCGCAGTCCTCTCCAGATCTGCCGGTTCATTATATACCTGTGGCACCTGACTCTAATACCTGA

Translation (254 aa):
MGRDLRPGSRVLLLLLLLLLVYLTQPGNGNEGSVTGSCYCGKRISSDSPPSVQFMNRLRKHLRAYHRCLY
YTRFQLLSWSVCGGNKDPWVQELMSCLDLKECGHAYSGIVAHQKHLLPTSPPISQASEGASSDIHTPAQM
LLSTLQSTQRPTLPVGSLSSDKELTRPNETTIHTAGHSLAAGPEAGENQKQPEKNAGPTARTSATVPVLC
LLAIIFILTAALSYVLCKRRRGQSPQSSPDLPVHYIPVAPDSNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH