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Report for CCDS3410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3410.1 Public Homo sapiens 4 NKX3-2 24 110 108 CCDS HistoryNCBI Gene:579Re-query CCDS DB by CCDS ID:3410.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382438.6 ENSP00000371875.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382438.6Link to Ensembl Protein Viewer:ENSP00000371875.5Re-query CCDS DB by Nucleotide ID:ENST00000382438Re-query CCDS DB by Protein ID:ENSP00000371875
Original member Current member NCBI NM_001189.4 NP_001180.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001189.4Link to Protein Sequence:NP_001180.1Re-query CCDS DB by Nucleotide ID:NM_001189Re-query CCDS DB by Protein ID:NP_001180Link to BLAST:NP_001180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180.1 333 P78367 333 100% 0 0

Chromosomal Locations for CCDS 3410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 13541993 13542528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13543949 13544414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCTGTGCGCGGCGCCAACACCTTGACGTCCTTCTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGC
GCGGCGGGCTGGCCGCGCCAGAGGGGCGCCCGGCGCCCGGGGGCACAGCGGCATCGGTGGCCGCGGCTCC
CGCTGTCTGCTGTTGGCGGCTCTTTGGGGAGAGGGACGCGGGCGCGTTGGGGGGCGCCGAGGACTCTCTG
CTGGCGTCTCCTGCCGGTACCAGAACAGCTGCGGGGCGGACTGCGGAGAGCCCGGAAGGCTGGGACTCGG
ACTCCGCGCTCAGCGAGGAGAACGAGAGCAGGCGGCGCTGCGCGGACGCGCGGGGGGCCAGCGGGGCCGG
CCTTGCGGGGGGATCCTTGAGCCTCGGCCAGCCGGTCTGTGAGCTGGCCGCTTCCAAAGACCTAGAGGAG
GAAGCCGCGGGCCGGAGCGACAGCGAGATGTCCGCCAGCGTCTCAGGCGACCGCAGCCCAAGGACCGAGG
ACGACGGTGTTGGCCCCAGAGGTGCACACGTGTCCGCGCTGTGCAGCGGGGCCGGCGGCGGGGGCGGCAG
CGGGCCGGCAGGCGTCGCGGAGGAGGAGGAGGAGCCGGCGGCGCCCAAGCCACGCAAGAAGCGCTCGCGG
GCCGCTTTCTCCCACGCGCAGGTCTTCGAGCTGGAGCGCCGCTTTAACCACCAGCGCTACCTGTCCGGGC
CCGAGCGCGCAGACCTGGCCGCGTCGCTGAAGCTCACCGAGACGCAGGTGAAAATCTGGTTCCAGAACCG
TCGCTACAAGACAAAGCGCCGGCAGATGGCAGCCGACCTGCTGGCCTCGGCGCCCGCCGCCAAGAAGGTG
GCCGTAAAGGTGCTGGTGCGCGACGACCAGAGACAATACCTGCCCGGCGAAGTGCTGCGGCCACCCTCGC
TTCTGCCACTGCAGCCCTCCTACTATTACCCGTACTACTGCCTCCCAGGCTGGGCGCTCTCCACCTGCGC
AGCTGCCGCAGGCACCCAGTGA

Translation (333 aa):
MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDAGALGGAEDSL
LASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEE
EAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSR
AAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKV
AVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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