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Report for CCDS47042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47042.1 Public Homo sapiens 4 WDR19 24 110 108 CCDS HistoryNCBI Gene:57728Re-query CCDS DB by CCDS ID:47042.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399820.8 ENSP00000382717.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399820.8Link to Ensembl Protein Viewer:ENSP00000382717.3Re-query CCDS DB by Nucleotide ID:ENST00000399820Re-query CCDS DB by Protein ID:ENSP00000382717
Original member Current member NCBI NM_025132.4 NP_079408.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025132.4Link to Protein Sequence:NP_079408.3Re-query CCDS DB by Nucleotide ID:NM_025132Re-query CCDS DB by Protein ID:NP_079408Link to BLAST:NP_079408.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079408.3 1342 Q8NEZ3-1 1342 100% 0 0

Chromosomal Locations for CCDS 47042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39182558 39182563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39185726 39185817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39186539 39186604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39189656 39189781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39194544 39194659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39199478 39199593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39203642 39203722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39205154 39205266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39205563 39205736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39214601 39214671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39215841 39216013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39216096 39216210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39217134 39217240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39217983 39218105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39224884 39225033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39228210 39228357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39228486 39228690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39231797 39231956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39232162 39232272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39234766 39234875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39240277 39240334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39244248 39244388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39244470 39244552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39245369 39245452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39253146 39253292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39253906 39254030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39255848 39255960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39257486 39257554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39266063 39266140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39267995 39268091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39269976 39270100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39272980 39273061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39274808 39274958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39277020 39277143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39278131 39278207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39278539 39278650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4029 nt):
ATGAAGCGTATTTTCTCACTGCTAGAAAAGACTTGGCTTGGCGCACCAATACAGTTTGCCTGGCAAAAAA
CATCAGGAAACTACCTTGCAGTAACAGGAGCTGATTATATTGTGAAAATCTTTGATCGCCATGGTCAAAA
AAGAAGTGAAATTAACTTACCTGGTAACTGTGTTGCCATGGATTGGGATAAAGATGGAGATGTCCTAGCA
GTGATTGCTGAGAAATCTAGCTGCATTTATCTTTGGGATGCCAACACAAATAAGACCAGCCAGTTAGACA
ATGGCATGAGGGATCAAATGTCTTTCCTTCTTTGGTCAAAAGTTGGAAGTTTCCTGGCTGTTGGAACTGT
TAAAGGAAATTTGCTTATTTATAATCATCAGACATCTCGAAAGATTCCTGTCCTTGGAAAACATACTAAG
AGAATCACTTGTGGATGTTGGAATGCAGAAAATCTGCTTGCTTTAGGTGGTGAAGATAAAATGATTACAG
TTAGTAATCAGGAAGGTGACACGATAAGACAGACACAAGTGAGATCAGAGCCTAGCAACATGCAGTTTTT
CTTGATGAAGATGGATGACCGAACCTCTGCTGCTGAAAGCATGATAAGTGTGGTGCTTGGCAAGAAAACT
TTGTTTTTTTTAAATCTGAATGAACCAGATAACCCAGCTGATCTTGAATTTCAGCAGGACTTTGGCAACA
TTGTCTGCTATAATTGGTATGGTGATGGCCGCATCATGATTGGTTTTTCATGTGGACATTTTGTGGTCAT
TTCTACTCATACTGGAGAGCTTGGTCAAGAGATATTTCAGGCTCGTAACCATAAAGATAATCTAACCAGC
ATTGCAGTATCACAGACTCTTAACAAAGTTGCTACATGTGGAGATAACTGCATTAAAATCCAAGACTTGG
TTGACTTAAAAGACATGTATGTTATACTCAACCTGGATGAGGAAAATAAAGGATTGGGTACCTTGTCCTG
GACTGATGATGGCCAGTTGCTAGCACTCTCTACCCAAAGGGGCTCACTTCATGTTTTCCTGACCAAGCTT
CCCATACTTGGGGATGCCTGCAGCACAAGGATTGCCTATCTCACCTCCCTCCTTGAAGTCACCGTAGCCA
ACCCTGTTGAAGGAGAGCTACCAATCACAGTTTCTGTTGATGTGGAACCCAACTTTGTGGCAGTAGGTCT
TTATCATCTGGCTGTAGGAATGAATAATCGAGCTTGGTTTTATGTCCTTGGAGAAAATGCTGTGAAAAAA
TTGAAAGATATGGAGTATCTGGGAACAGTAGCCAGTATTTGCCTTCATTCTGACTATGCTGCTGCACTTT
TTGAAGGCAAAGTCCAGTTACATTTGATAGAAAGCGAAATCTTGGATGCTCAAGAAGAACGTGAGACTCG
GCTTTTCCCAGCAGTGGATGATAAGTGCCGTATCTTATGCCATGCCTTAACTAGTGATTTCCTCATCTAT
GGTACAGATACTGGTGTCGTTCAGTATTTCTACATTGAAGACTGGCAATTCGTTAATGATTATCGACATC
CTGTCAGTGTGAAAAAGATTTTTCCCGACCCAAATGGGACCAGATTAGTTTTCATTGATGAAAAAAGTGA
TGGATTTGTTTACTGTCCAGTCAATGACGCTACCTATGAGATTCCAGATTTTTCACCAACCATTAAAGGT
GTTCTTTGGGAAAACTGGCCAATGGATAAAGGTGTATTTATTGCTTATGATGATGATAAGGTGTACACTT
ATGTCTTTCACAAGGACACTATACAAGGAGCCAAGGTTATTTTGGCTGGTAGCACCAAAGTTCCTTTTGC
TCATAAACCTTTGCTGCTATATAATGGAGAGCTGACCTGCCAAACACAGAGTGGAAAAGTAAACAACATC
TACCTTAGCACCCATGGCTTTCTCAGCAACTTAAAAGATACGGGGCCTGACGAACTGAGACCAATGCTGG
CACAGAATTTAATGCTAAAGAGGTTTTCTGATGCTTGGGAAATGTGCAGGATTCTGAATGATGAGGCTGC
CTGGAATGAGTTGGCCAGAGCTTGTCTACATCACATGGAAGTGGAGTTTGCAATCCGTGTTTATCGGAGA
ATTGGAAATGTTGGCATAGTGATGTCCTTGGAACAAATAAAGGGAATAGAGGACTACAATCTTTTGGCAG
GACACCTTGCCATGTTTACCAACGATTATAACCTGGCTCAGGACTTGTACCTTGCATCCAGCTGTCCTAT
TGCTGCCCTGGAGATGAGAAGGGATTTACAGCATTGGGACAGTGCTCTACAACTGGCAAAGCATTTGGCC
CCAGACCAGATACCTTTTATATCAAAAGAATATGCTATTCAGCTTGAATTCGCGGGTGATTATGTAAATG
CTTTGGCTCATTATGAGAAAGGAATAACAGGTGATAATAAGGAACATGATGAAGCTTGTCTGGCTGGAGT
GGCCCAGATGTCCATAAGAATGGGAGACATACGTCGAGGGGTTAACCAAGCCCTCAAGCATCCCAGCAGG
GTCCTTAAAAGAGACTGTGGAGCCATATTGGAGAATATGAAGCAATTTTCAGAAGCGGCCCAACTGTATG
AAAAAGGTCTCTACTACGATAAAGCAGCATCTGTTTACATCCGCTCTAAGAATTGGGCAAAAGTTGGTGA
TCTTCTGCCCCACGTTTCTTCTCCTAAGATCCATTTGCAGTATGCCAAAGCCAAGGAAGCAGATGGAAGA
TACAAAGAAGCTGTTGTAGCTTATGAAAATGCAAAACAGTGGCAAAGTGTAATCCGCATCTATCTGGATC
ACCTCAATAATCCTGAAAAAGCTGTCAATATTGTTAGAGAGACCCAGTCTCTGGATGGAGCCAAAATGGT
AGCCAGGTTTTTTCTACAGCTTGGTGACTATGGGTCTGCCATCCAGTTTCTTGTCATGTCCAAATGCAAC
AATGAAGCTTTCACACTGGCTCAGCAACACAACAAAATGGAAATCTATGCAGATATTATTGGTTCTGAAG
ACACTACTAATGAAGACTATCAAAGCATTGCCTTATACTTTGAAGGAGAAAAGAGATATCTTCAGGCTGG
AAAATTCTTCTTGCTGTGTGGCCAATATTCACGAGCACTTAAACACTTCCTGAAATGCCCAAGCTCGGAA
GATAATGTGGCAATAGAAATGGCAATTGAAACTGTTGGTCAGGCCAAAGATGAACTGCTGACCAATCAGC
TGATAGACCATCTCCTGGGGGAGAACGATGGCATGCCTAAGGATGCCAAGTACCTGTTCCGCTTGTACAT
GGCTCTGAAGCAATACCGAGAAGCTGCCCAGACTGCCATCATCATTGCCAGAGAAGAGCAGTCTGCAGGC
AACTACCGGAATGCACACGATGTTCTCTTCAGTATGTATGCAGAACTGAAATCCCAGAAGATCAAAATTC
CCTCCGAGATGGCCACCAACCTCATGATTCTGCACAGCTATATACTAGTAAAGATTCATGTTAAAAATGG
AGATCACATGAAAGGGGCTCGCATGCTCATTCGGGTGGCCAACAACATCAGCAAATTTCCATCACACATT
GTACCCATCCTGACGTCAACTGTGATTGAGTGTCACAGGGCAGGCCTGAAGAACTCTGCTTTCAGCTTCG
CAGCTATGTTGATGAGGCCTGAATACCGCAGCAAAATAGATGCCAAATACAAAAAGAAGATCGAGGGAAT
GGTCAGGAGACCCGATATATCTGAGATAGAAGAGGCCACGACTCCATGTCCATTCTGCAAATTTCTTCTC
CCAGAGTGTGAACTCCTCTGTCCTGGATGTAAAAACAGTATCCCATATTGCATTGCAACAGGTCGACACA
TGTTGAAAGATGACTGGACGGTGTGTCCACATTGTGACTTCCCTGCTCTATACTCAGAATTGAAGATCAT
GCTAAACACTGAAAGCACATGTCCTATGTGTTCAGAAAGATTAAACGCTGCTCAGCTGAAAAAGATTTCA
GACTGTACCCAGTACCTGCGAACGGAGGAGGAACTGTGA

Translation (1342 aa):
MKRIFSLLEKTWLGAPIQFAWQKTSGNYLAVTGADYIVKIFDRHGQKRSEINLPGNCVAMDWDKDGDVLA
VIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGNLLIYNHQTSRKIPVLGKHTK
RITCGCWNAENLLALGGEDKMITVSNQEGDTIRQTQVRSEPSNMQFFLMKMDDRTSAAESMISVVLGKKT
LFFLNLNEPDNPADLEFQQDFGNIVCYNWYGDGRIMIGFSCGHFVVISTHTGELGQEIFQARNHKDNLTS
IAVSQTLNKVATCGDNCIKIQDLVDLKDMYVILNLDEENKGLGTLSWTDDGQLLALSTQRGSLHVFLTKL
PILGDACSTRIAYLTSLLEVTVANPVEGELPITVSVDVEPNFVAVGLYHLAVGMNNRAWFYVLGENAVKK
LKDMEYLGTVASICLHSDYAAALFEGKVQLHLIESEILDAQEERETRLFPAVDDKCRILCHALTSDFLIY
GTDTGVVQYFYIEDWQFVNDYRHPVSVKKIFPDPNGTRLVFIDEKSDGFVYCPVNDATYEIPDFSPTIKG
VLWENWPMDKGVFIAYDDDKVYTYVFHKDTIQGAKVILAGSTKVPFAHKPLLLYNGELTCQTQSGKVNNI
YLSTHGFLSNLKDTGPDELRPMLAQNLMLKRFSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYRR
IGNVGIVMSLEQIKGIEDYNLLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLAKHLA
PDQIPFISKEYAIQLEFAGDYVNALAHYEKGITGDNKEHDEACLAGVAQMSIRMGDIRRGVNQALKHPSR
VLKRDCGAILENMKQFSEAAQLYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGR
YKEAVVAYENAKQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCN
NEAFTLAQQHNKMEIYADIIGSEDTTNEDYQSIALYFEGEKRYLQAGKFFLLCGQYSRALKHFLKCPSSE
DNVAIEMAIETVGQAKDELLTNQLIDHLLGENDGMPKDAKYLFRLYMALKQYREAAQTAIIIAREEQSAG
NYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYILVKIHVKNGDHMKGARMLIRVANNISKFPSHI
VPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRSKIDAKYKKKIEGMVRRPDISEIEEATTPCPFCKFLL
PECELLCPGCKNSIPYCIATGRHMLKDDWTVCPHCDFPALYSELKIMLNTESTCPMCSERLNAAQLKKIS
DCTQYLRTEEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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