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Report for CCDS31464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31464.1 Public Homo sapiens 11 LRRC4C 24 110 108 CCDS HistoryNCBI Gene:57689Re-query CCDS DB by CCDS ID:31464.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278198.2 ENSP00000278198.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000278198.2Link to Ensembl Protein Viewer:ENSP00000278198.1Re-query CCDS DB by Nucleotide ID:ENST00000278198Re-query CCDS DB by Protein ID:ENSP00000278198
Original member Current member EBI ENST00000530763.5 ENSP00000434761.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530763.5Link to Ensembl Protein Viewer:ENSP00000434761.1Re-query CCDS DB by Nucleotide ID:ENST00000530763Re-query CCDS DB by Protein ID:ENSP00000434761
Original member Current member EBI ENST00000527150.5 ENSP00000436976.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527150.5Link to Ensembl Protein Viewer:ENSP00000436976.1Re-query CCDS DB by Nucleotide ID:ENST00000527150Re-query CCDS DB by Protein ID:ENSP00000436976
Original member Current member EBI ENST00000528697.6 ENSP00000437132.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000528697.6Link to Ensembl Protein Viewer:ENSP00000437132.1Re-query CCDS DB by Nucleotide ID:ENST00000528697Re-query CCDS DB by Protein ID:ENSP00000437132
Original member Current member EBI ENST00000619527.4 ENSP00000480903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619527.4Link to Ensembl Protein Viewer:ENSP00000480903.1Re-query CCDS DB by Nucleotide ID:ENST00000619527Re-query CCDS DB by Protein ID:ENSP00000480903
Original member Current member NCBI NM_001258419.2 NP_001245348.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258419.2Link to Protein Sequence:NP_001245348.1Re-query CCDS DB by Nucleotide ID:NM_001258419Re-query CCDS DB by Protein ID:NP_001245348Link to BLAST:NP_001245348.1
Original member Current member NCBI NM_020929.3 NP_065980.1 Accepted alive Link to Nucleotide Sequence:NM_020929.3Link to Protein Sequence:NP_065980.1Re-query CCDS DB by Nucleotide ID:NM_020929Re-query CCDS DB by Protein ID:NP_065980Link to BLAST:NP_065980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245348.1 640 Q9HCJ2 640 100% 0 0
NP_065980.1 640 Q9HCJ2 640 100% 0 0

Chromosomal Locations for CCDS 31464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 40114370 40116292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGTTGAACAAGATGACCTTACATCCACAGCAGATAATGATAGGTCCTAGGTTTAACAGGGCCCTATTTG
ACCCCCTGCTTGTGGTGCTGCTGGCTCTTCAACTTCTTGTGGTGGCTGGTCTGGTGCGGGCTCAGACCTG
CCCTTCTGTGTGCTCCTGCAGCAACCAGTTCAGCAAGGTGATTTGTGTTCGGAAAAACCTGCGTGAGGTT
CCGGATGGCATCTCCACCAACACACGGCTGCTGAACCTCCATGAGAACCAAATCCAGATCATCAAAGTGA
ACAGCTTCAAGCACTTGAGACACTTGGAAATCCTACAGTTGAGTAGGAACCATATCAGAACCATTGAAAT
TGGGGCTTTCAATGGTCTGGCGAACCTCAACACTCTGGAACTCTTTGACAATCGTCTTACTACCATCCCG
AATGGAGCTTTTGTATACTTGTCTAAACTGAAGGAGCTCTGGTTGCGAAACAACCCCATTGAAAGCATCC
CTTCTTATGCTTTTAACAGAATTCCTTCTTTGCGCCGACTAGACTTAGGGGAATTGAAAAGACTTTCATA
CATCTCAGAAGGTGCCTTTGAAGGTCTGTCCAACTTGAGGTATTTGAACCTTGCCATGTGCAACCTTCGG
GAAATCCCTAACCTCACACCGCTCATAAAACTAGATGAGCTGGATCTTTCTGGGAATCATTTATCTGCCA
TCAGGCCTGGCTCTTTCCAGGGTTTGATGCACCTTCAAAAACTGTGGATGATACAGTCCCAGATTCAAGT
GATTGAACGGAATGCCTTTGACAACCTTCAGTCACTAGTGGAGATCAACCTGGCACACAATAATCTAACA
TTACTGCCTCATGACCTCTTCACTCCCTTGCATCATCTAGAGCGGATACATTTACATCACAACCCTTGGA
ACTGTAACTGTGACATACTGTGGCTCAGCTGGTGGATAAAAGACATGGCCCCCTCGAACACAGCTTGTTG
TGCCCGGTGTAACACTCCTCCCAATCTAAAGGGGAGGTACATTGGAGAGCTCGACCAGAATTACTTCACA
TGCTATGCTCCGGTGATTGTGGAGCCCCCTGCAGACCTCAATGTCACTGAAGGCATGGCAGCTGAGCTGA
AATGTCGGGCCTCCACATCCCTGACATCTGTATCTTGGATTACTCCAAATGGAACAGTCATGACACATGG
GGCGTACAAAGTGCGGATAGCTGTGCTCAGTGATGGTACGTTAAATTTCACAAATGTAACTGTGCAAGAT
ACAGGCATGTACACATGTATGGTGAGTAATTCCGTTGGGAATACTACTGCTTCAGCCACCCTGAATGTTA
CTGCAGCAACCACTACTCCTTTCTCTTACTTTTCAACCGTCACAGTAGAGACTATGGAACCGTCTCAGGA
TGAGGCACGGACCACAGATAACAATGTGGGTCCCACTCCAGTGGTCGACTGGGAGACCACCAATGTGACC
ACCTCTCTCACACCACAGAGCACAAGGTCGACAGAGAAAACCTTCACCATCCCAGTGACTGATATAAACA
GTGGGATCCCAGGAATTGATGAGGTCATGAAGACTACCAAAATCATCATTGGGTGTTTTGTGGCCATCAC
ACTCATGGCTGCAGTGATGCTGGTCATTTTCTACAAGATGAGGAAGCAGCACCATCGGCAAAACCATCAC
GCCCCAACAAGGACTGTTGAAATTATTAATGTGGATGATGAGATTACGGGAGACACACCCATGGAAAGCC
ACCTGCCCATGCCTGCTATCGAGCATGAGCACCTAAATCACTATAACTCATACAAATCTCCCTTCAACCA
CACAACAACAGTTAACACAATAAATTCAATACACAGTTCAGTGCATGAACCGTTATTGATCCGAATGAAC
TCTAAAGACAATGTACAAGAGACTCAAATCTAA

Translation (640 aa):
MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREV
PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP
NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR
EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT
LLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFT
CYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQD
TGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVVDWETTNVT
TSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHH
APTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMN
SKDNVQETQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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