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Report for CCDS41319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41319.1 Public Homo sapiens 1 ZSWIM5 24 110 108 CCDS HistoryNCBI Gene:57643Re-query CCDS DB by CCDS ID:41319.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41319.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359600.6 ENSP00000352614.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359600.6Link to Ensembl Protein Viewer:ENSP00000352614.5Re-query CCDS DB by Nucleotide ID:ENST00000359600Re-query CCDS DB by Protein ID:ENSP00000352614
Original member Current member NCBI NM_020883.2 NP_065934.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020883.2Link to Protein Sequence:NP_065934.1Re-query CCDS DB by Nucleotide ID:NM_020883Re-query CCDS DB by Protein ID:NP_065934Link to BLAST:NP_065934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065934.1 1185 Q9P217 1185 100% 0 0

Chromosomal Locations for CCDS 41319.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45018454 45019316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45020066 45020147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45020625 45020788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45034312 45034469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45035688 45035823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45036039 45036299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45038936 45039073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45040392 45040538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45043219 45043395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45051074 45051253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45058609 45058759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45060099 45060247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45087881 45088237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45205756 45206350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3558 nt):
ATGGCGGACGGAGGTGAGCGAGAGGAGCTGCTCTCGCCGTCACCGGTCTCTCCGGCTAAGCGGCAGTGTT
CGTGGCCCAGCCCGCAGGCTCATCACCCTCGCGGTTCGCCTGGGGCAGCCGGCGGAGGGGCAGGGGGCGT
CGGCAGCAGCTGCCTGGTCCTCGGGGCCCGCCCCCACCTGCAGCCGGATTCCTTACTGGACTGCGCCGCC
AAGACGGTGGCGGAAAAGTGGGCATACGAACGGGTGGAGGAGCGCTTCGAGCGGATCCCGGAGCCCGTGC
AGCGCCGCATCGTCTACTGGTCCTTCCCGCGGAATGAGCGGGAGATCTGCATGTACTCCAGCTTCCAGTA
CCGGGGCGGCCCCGGCGCCGGCGCTGCTGGCGGCGCCGCGGGGGCTTCGCCGGCCGAGGAGGGGCCGCAG
CCACCCCCCGGGGCCGCCGCTCCGGCCGGCTCCGCCCCCGGGGGCGTCGCGGCTGGGGCATCCCCCGGGC
TGGGCGCAGGGGCCGGCGCGGCCGGCTGCGGTGGCGAGGGGCTCCCGTTCCGCCGGGGCATCCGTCTGCT
GGACAGCGGCTCCGTGGAGAACGTGCTGCAAGTCGGCTTTCATCTGAGTGGCACAGTAACTGAGCTGGCC
ACTGCCTCTGAACCAGCAGTGACTTATAAAGTTGCAATCAGTTTTGATCGATGCAAAATCACCTCAGTGA
CATGTGGCTGTGGGAACAAGGACATATTCTACTGTGCCCATGTGGTAGCACTCTCACTCTACAGGATCCG
TAAACCAGACCAAGTCAAATTGCGTCTTCCTATCTCCGAAACCCTTTTCCAGATGAATAGGGACCAGCTA
CAAAAGTTTATTCAATATTTAATCACGGCACACCACACTGAAGTTCTTCCTACTGCACAGAAACTGGCAG
ATGAGATTCTATCCTCCAACTCAGAAATCAACCAAGTGAATGGTGCCCCTGACCCCACAGCTGGGGCCAG
CATTGACGATGAGAACTGTTGGCATTTGGATGAAGAACAGGTGAAAGAACAAGTGAAGCTTTTTCTCTCC
CAGGGCGGTTACTGTGGCTCTGGAAAGCAACTCAACTCAATGTTTGCCAAGGTTCGAGAAATGCTGCGGA
TGAGAGATTCCAATGGAGCAAGGATGCTGACACTAATAACTGAGCAGTTTGTGGCTGACCCACGACTCAC
ACTCTGGAGGCAGCAAGGAACAAACATGACAGACAAGTGCAGGCAGCTCTGGGATGAGCTAGGGGCTTTA
TGGGTGTGCATAATTTTAAATCCACACTGCAAACTGGAGGAGAAATCCTGCTGGCTGCAGCAGCTGCAGA
AGTGGAGCGACCTGGATGTCTGTCCCCTGGAGGATGGAAACTATGGACATGAGCTGCCCAACATCACCAA
TGCACTTCCCCAGAGTGCCATTCACAGCCCAGACTCCTTATCCAGACCAAGACGAACAGTATTCACTAGA
GCCATTGAGGGGCGTGAATTACATTGGCAGGATAGCCACCTACAGCGAATAATCAGCAGTGATGTTTATA
CAGCTCCTGCCTGCCAGCGGGAAAGTGAAAGACTACTCTTTAATTCCCAAGGCCAGCCACTGTGGCTTGA
GCATGTGCCTACAGCCTGTGCTCGAGTTGACGCCCTGCGTTCCCATGGTTATCCAAAAGAGGCCCTCAGA
CTCACAGTGGCCATTATTAATACTCTGAGGTTGCAGCAGCAGCGGCAACTGGAAATCTACAAGCATCAGA
AGAAAGAACTGTTGCAGAGAGGAACCACAACCATCACAAACCTGGAGGGCTGGGTGGGCCACCCCCTGGA
TCCCATCGACTGCCTGTTTCTCACTTTGACTGAGGCCTGCCGCCTGAATGATGATGGCTATCTGGAGATG
TCAGATATGAATGAAAGCAGACCCCCTGTGTACCAGCATGTACCTGTGGCTGCAGGCTCCCCAAACAGCA
GTGAGTCCTACCTGTCATTGGCCCTGGAAGTTGCACTGATGGGCCTGGGTCAACAGAGGTTAATGCCTGA
AGGCCTCTACGCACAGGACAAGGTATGCCGTAATGAGGAGCAGCTCCTGAGCCAACTCCAAGAGCTGCAG
CTGGACGATGAGCTAGTGCAAACACTGCAAAAACAATGCATCTTACTGCTGGAAGGAGGTCCTTTCAGCG
GTCTGGGAGAAGTCATCCACCGAGAGAGTGTTCCCATGCATACCTTTGCCAAGTATTTGTTCTCAGCTCT
GCTGCCTCATGATCCAGACCTGTCCTATAAATTAGCCTTACGTGCCATGAGGTTACCTGTTTTAGAAAAC
TCAGCTTCTGCAGGCGACACATCCCACCCTCACCATATGGTGTCTGTGGTGCCCAGCCGTTATCCTCGCT
GGTTCACGCTTGGACACTTGGAATCACAGCAGTGTGAACTGGCCTCCACCATGCTGACTGCTGCCAAAGG
AGACACTTTGAGACTCCGAACAATTCTGGAAGCAATACAGAAGCACATTCATTCTTCCTCCCTCATCTTC
AAACTGGCCCAAGATGCATTCAAGATTGCTACTCCCACCGACAGTAGTACTGACAGCACCCTGCTCAACG
TTGCCCTGGAACTTGGGTTACAGGTGATGCGGATGACCTTATCAACCCTTAACTGGAGACGCAGGGAGAT
GGTACGATGGTTGGTGACCTGTGCTACAGAAGTGGGTGTGCGGGCCCTGGTGAGCATCTTGCAGAGCTGG
TACACACTCTTCACCCCTACTGAGGCTACTAGTATTGTAGCTGCCACAGCCGTATCCCACACCACTATCC
TGCGCCTCAGTCTTGACTATCCACAGCGGGAGGAACTGGCTAGCTGTGCTCGCACACTGGCTCTACAGTG
TGCTATGAAGGATCCACAGAGCTGTGCCCTGTCAGCCCTTACACTCTGTGAGAAAGACCACATTGCCTTT
GAGGCAGCCTACCAGATTGCCATTGATGCTGCTGCTGGTGGTATGACCCATTCACAGCTGTTCACCATCG
CCCGCTACATGGAGCTCCGTGGCTACCCGCTACGTGCCTTCAAGCTGGCCTCATTGGCCATGAGCCATCT
TAACCTGGCCTACAACCAGGATACTCACCCAGCCATCAATGATGTGCTCTGGGCTTGTGCTCTCAGCCAC
TCTCTGGGCAAGAATGAGCTGGCAGCTCTCATCCCCCTGGTGGTGAAGAGTGTGCACTGTGCCACAGTGC
TTTCAGACATCTTACGACGCTGCACAGTGACTGCACCTGGCCTGGCCGGCATCCCAGGCCGCCGAAGCTC
TGGAAAGCTCATGTCCACTGACAAAGCTCCATTGCGCCAGTTGCTGGATGCCACCATCAATGCCTATATC
AACACTACACACTCACGCCTAACACACATCAGCCCTCGCCACTATGGAGAGTTCATTGAGTTTCTAAGCA
AGGCTCGGGAGACCTTCCTGCTGCCCCAGGATGGCCACCTGCAGTTTGCCCAGTTCATCGACAACCTCAA
ACAGATCTACAAAGGCAAGAAAAAGTTGATGCTGCTGGTGCGAGAGCGCTTTGGCTGA

Translation (1185 aa):
MADGGEREELLSPSPVSPAKRQCSWPSPQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQPDSLLDCAA
KTVAEKWAYERVEERFERIPEPVQRRIVYWSFPRNEREICMYSSFQYRGGPGAGAAGGAAGASPAEEGPQ
PPPGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENVLQVGFHLSGTVTELA
TASEPAVTYKVAISFDRCKITSVTCGCGNKDIFYCAHVVALSLYRIRKPDQVKLRLPISETLFQMNRDQL
QKFIQYLITAHHTEVLPTAQKLADEILSSNSEINQVNGAPDPTAGASIDDENCWHLDEEQVKEQVKLFLS
QGGYCGSGKQLNSMFAKVREMLRMRDSNGARMLTLITEQFVADPRLTLWRQQGTNMTDKCRQLWDELGAL
WVCIILNPHCKLEEKSCWLQQLQKWSDLDVCPLEDGNYGHELPNITNALPQSAIHSPDSLSRPRRTVFTR
AIEGRELHWQDSHLQRIISSDVYTAPACQRESERLLFNSQGQPLWLEHVPTACARVDALRSHGYPKEALR
LTVAIINTLRLQQQRQLEIYKHQKKELLQRGTTTITNLEGWVGHPLDPIDCLFLTLTEACRLNDDGYLEM
SDMNESRPPVYQHVPVAAGSPNSSESYLSLALEVALMGLGQQRLMPEGLYAQDKVCRNEEQLLSQLQELQ
LDDELVQTLQKQCILLLEGGPFSGLGEVIHRESVPMHTFAKYLFSALLPHDPDLSYKLALRAMRLPVLEN
SASAGDTSHPHHMVSVVPSRYPRWFTLGHLESQQCELASTMLTAAKGDTLRLRTILEAIQKHIHSSSLIF
KLAQDAFKIATPTDSSTDSTLLNVALELGLQVMRMTLSTLNWRRREMVRWLVTCATEVGVRALVSILQSW
YTLFTPTEATSIVAATAVSHTTILRLSLDYPQREELASCARTLALQCAMKDPQSCALSALTLCEKDHIAF
EAAYQIAIDAAAGGMTHSQLFTIARYMELRGYPLRAFKLASLAMSHLNLAYNQDTHPAINDVLWACALSH
SLGKNELAALIPLVVKSVHCATVLSDILRRCTVTAPGLAGIPGRRSSGKLMSTDKAPLRQLLDATINAYI
NTTHSRLTHISPRHYGEFIEFLSKARETFLLPQDGHLQFAQFIDNLKQIYKGKKKLMLLVRERFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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