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Report for CCDS37854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37854.1 Public Mus musculus 18 Stard6 23 108 98 CCDS HistoryNCBI Gene:170461Re-query CCDS DB by CCDS ID:37854.1Re-query CCDS DB by GeneID:170461See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114959.8 ENSMUSP00000110609.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114959.8Link to Ensembl Protein Viewer:ENSMUSP00000110609.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114959Re-query CCDS DB by Protein ID:ENSMUSP00000110609
Original member Current member EBI ENSMUST00000164223.7 ENSMUSP00000126055.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164223.7Link to Ensembl Protein Viewer:ENSMUSP00000126055.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164223Re-query CCDS DB by Protein ID:ENSMUSP00000126055
Original member Current member EBI ENSMUST00000168249.8 ENSMUSP00000130991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168249.8Link to Ensembl Protein Viewer:ENSMUSP00000130991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168249Re-query CCDS DB by Protein ID:ENSMUSP00000130991
Original member Current member EBI ENSMUST00000174118.7 ENSMUSP00000134511.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174118.7Link to Ensembl Protein Viewer:ENSMUSP00000134511.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174118Re-query CCDS DB by Protein ID:ENSMUSP00000134511
Original member Current member NCBI NM_001289648.1 NP_001276577.1 Accepted alive Link to Nucleotide Sequence:NM_001289648.1Link to Protein Sequence:NP_001276577.1Re-query CCDS DB by Nucleotide ID:NM_001289648Re-query CCDS DB by Protein ID:NP_001276577Link to BLAST:NP_001276577.1
Original member Current member NCBI NM_001289649.1 NP_001276578.1 Accepted alive Link to Nucleotide Sequence:NM_001289649.1Link to Protein Sequence:NP_001276578.1Re-query CCDS DB by Nucleotide ID:NM_001289649Re-query CCDS DB by Protein ID:NP_001276578Link to BLAST:NP_001276578.1
Original member Current member NCBI NM_001289650.1 NP_001276579.1 Accepted alive Link to Nucleotide Sequence:NM_001289650.1Link to Protein Sequence:NP_001276579.1Re-query CCDS DB by Nucleotide ID:NM_001289650Re-query CCDS DB by Protein ID:NP_001276579Link to BLAST:NP_001276579.1
Original member Current member NCBI NM_029019.4 NP_083295.1 Accepted alive Link to Nucleotide Sequence:NM_029019.4Link to Protein Sequence:NP_083295.1Re-query CCDS DB by Nucleotide ID:NM_029019Re-query CCDS DB by Protein ID:NP_083295Link to BLAST:NP_083295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276577.1 233 P59096 233 100% 0 0
NP_001276578.1 233 P59096 233 100% 0 0
NP_001276579.1 233 P59096 233 100% 0 0
NP_083295.1 233 P59096 233 100% 0 0

Chromosomal Locations for CCDS 37854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 70476104 70476193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 70476382 70476431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 70483412 70483538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 70496114 70496231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 70498548 70498641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 70500403 70500625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGACTATAAGGCAATTGCCCAACAAACTGCTGAACAAGTTTTAGCTTACAATCAAGACCTATCTGGCT
GGAAACTCATTAAATCTTCAAAAAAGGTAACTGTTTCCAGCAAGACCTCTAGAATATTCCACGGAAACCT
ATACCGCGTTGAAGGAATAATCCCAGAATCAGCAGCTCATCTCTCTGACTTCCTCTTCAAACATGATCAC
AGAGTCTCATGGGACAAATCATTGAAAGGGTTCAATGTGATACACAAGATTGATTCGGACACACTCATAT
GCCACACCATTACACAAAGTTTTGCCATGGGCTCAATTTCCCCTAGAGACTTTATCGACTTAGTACACAT
CAAGCACTATGAAAGGAACGTGGACATTATCAGTACTAAAAGTGTGGACTTCCCAGGATATGCTCCAACT
TCGACTTATATCCGTGGCTTTAATCATCCCTCTGGCTATGTGTGTTCACCTCTGAAGGAAAACCCAGCCT
ATTCCAAGCTAGTGATTTTTGTCCAGACAGAGATGAAAGGAAAATTGCCTGCATCGGTAATTGAAAAGTC
TATGCCTTCCAACTTAGTAAGCTTCCTCCTCAATGTGAAAGATGGCGTAAAGACGTACAGAATTCCACCC
ATACGTGCCCGGCACAGTTCGCACTCCTCTGTGCACAAAAAGAAAGAAGGACATTCTGCCATTAAACCGT
AG

Translation (233 aa):
MDYKAIAQQTAEQVLAYNQDLSGWKLIKSSKKVTVSSKTSRIFHGNLYRVEGIIPESAAHLSDFLFKHDH
RVSWDKSLKGFNVIHKIDSDTLICHTITQSFAMGSISPRDFIDLVHIKHYERNVDIISTKSVDFPGYAPT
STYIRGFNHPSGYVCSPLKENPAYSKLVIFVQTEMKGKLPASVIEKSMPSNLVSFLLNVKDGVKTYRIPP
IRARHSSHSSVHKKKEGHSAIKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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