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Report for CCDS53121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53121.1 Public Mus musculus X Prrg1 23 108 98 CCDS HistoryNCBI Gene:546336Re-query CCDS DB by CCDS ID:53121.1Re-query CCDS DB by GeneID:546336See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114024.8 ENSMUSP00000109658.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114024.8Link to Ensembl Protein Viewer:ENSMUSP00000109658.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114024Re-query CCDS DB by Protein ID:ENSMUSP00000109658
Original member Current member EBI ENSMUST00000114025.7 ENSMUSP00000109659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114025.7Link to Ensembl Protein Viewer:ENSMUSP00000109659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114025Re-query CCDS DB by Protein ID:ENSMUSP00000109659
Original member Current member EBI ENSMUST00000177904.7 ENSMUSP00000136713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177904.7Link to Ensembl Protein Viewer:ENSMUSP00000136713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177904Re-query CCDS DB by Protein ID:ENSMUSP00000136713
Original member Current member NCBI NM_001164275.2 NP_001157747.1 Accepted alive Link to Nucleotide Sequence:NM_001164275.2Link to Protein Sequence:NP_001157747.1Re-query CCDS DB by Nucleotide ID:NM_001164275Re-query CCDS DB by Protein ID:NP_001157747Link to BLAST:NP_001157747.1
Original member Current member NCBI NM_001289683.1 NP_001276612.1 Accepted alive Link to Nucleotide Sequence:NM_001289683.1Link to Protein Sequence:NP_001276612.1Re-query CCDS DB by Nucleotide ID:NM_001289683Re-query CCDS DB by Protein ID:NP_001276612Link to BLAST:NP_001276612.1
Original member Current member NCBI NM_027322.2 NP_081598.1 Accepted alive Link to Nucleotide Sequence:NM_027322.2Link to Protein Sequence:NP_081598.1Re-query CCDS DB by Nucleotide ID:NM_027322Re-query CCDS DB by Protein ID:NP_081598Link to BLAST:NP_081598.1

Chromosomal Locations for CCDS 53121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78452687 78453172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78483751 78483911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 78520771 78520780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGGAAGGGTTTTCCTCACGGAAGAAAAAGCCAACTCAGTACTAAAACGCTACCCAAGAGCCAATGGGC
TTTTTGAAGAAATAAGACAGGGCAACATTGAGCGTGAGTGCAGAGAAGAAATCTGTACATATGAAGAAGC
CAGAGAGGCTTTTGAAAATCATGAAAAAACTAAGGAGTTTTGGAGCACCTACACAAAAGCACAACAAGGA
GAAACCAACAGAGGAAGTGACTGGTTTCAATTTTATCTTACTTTTCCATTAATCTTTGGCCTCTTCATTA
TTCTCCTTGTCATCTTCTTAATCTGGAGATGCTTTCTAAGAAACAAAACTCGGAGACAGACAGTGACTGA
AAGCCACATTCCTTTCCCTCAGCAACTTAACATCATCACTCCACCTCCTCCACCAGATGAAGTCTTTGAT
AGCAGTGCATTGTCTCCAGGGTTTTTGGAATATGTTGTTGGGCGTTCAGATTCGGTTTCCACTCGCCTTT
CCAACTGTGATCCCCCACCTACCTATGAGGAAGCCACCGGCCAGGTGAACCTGAGAAGGAGTGAAACAGA
ACCTCCTTTAGACCCACCACCAGAATATGAGGACATAGTCAACTCCAGTTCAGCTAGTGCCATTGCTATG
GTGCCTGTGGTCACCACCATCAAATGA

Translation (218 aa):
MGRVFLTEEKANSVLKRYPRANGLFEEIRQGNIERECREEICTYEEAREAFENHEKTKEFWSTYTKAQQG
ETNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTESHIPFPQQLNIITPPPPPDEVFD
SSALSPGFLEYVVGRSDSVSTRLSNCDPPPTYEEATGQVNLRRSETEPPLDPPPEYEDIVNSSSASAIAM
VPVVTTIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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