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Report for CCDS47808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47808.1 Public Homo sapiens 8 TRMT9B 24 110 108 CCDS HistoryNCBI Gene:57604Re-query CCDS DB by CCDS ID:47808.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524591.7 ENSP00000432695.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524591.7Link to Ensembl Protein Viewer:ENSP00000432695.1Re-query CCDS DB by Nucleotide ID:ENST00000524591Re-query CCDS DB by Protein ID:ENSP00000432695
Original member Current member NCBI NM_020844.3 NP_065895.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020844.3Link to Protein Sequence:NP_065895.2Re-query CCDS DB by Nucleotide ID:NM_020844Re-query CCDS DB by Protein ID:NP_065895Link to BLAST:NP_065895.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065895.2 454 Q9P272-1 454 100% 0 0

Chromosomal Locations for CCDS 47808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13006203 13006356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13012684 13012857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13021008 13022044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGATCATGAAGCCGCCCAGCTGGAGAAGCAGCATGTGCACAATGTGTACGAGAGCACAGCCCCTTACT
TCAGCGACCTGCAGAGCAAAGCCTGGCCTCGTGTCCGCCAGTTCCTGCAAGAGCAGAAGCCAGGCAGCCT
CATCGCTGACATAGGTTGTGGGACTGGAAAATATCTTAAAGTGAACAGCCAGGTACATACCGTGGGCTGT
GACTACTGTGGGCCACTGGTAGAGATTGCCCGGAATAGAGGATGTGAAGCCATGGTATGTGACAACCTTA
ATCTCCCCTTTAGGGATGAGGGCTTCGATGCCATCATCTCCATAGGAGTCATACATCATTTTTCTACAAA
ACAAAGAAGAATCAGAGCAATAAAAGAAATGGCCAGGGTCTTAGTTCCCGGAGGCCAACTGATGATTTAC
GTTTGGGCAATGGAACAAAAGAACCGTCACTTTGAGAAGCAAGACGTGCTTGTTCCATGGAACAGGGCTC
TGTGTTCCCAGCTCTTCTCAGAGTCCAGCCAGTCTGGGAGGAAGAGGCAGTGTGGATACCCAGAAAGAGG
CCATCCCTACCATCCTCCTTGCTCTGAGTGTAGCTGTTCTGTTTGTTTTAAAGAGCAGTGTGGTTCAAAA
CGGTCCCACAGCGTGGGCTATGAACCTGCTATGGCAAGAACCTGTTTTGCAAATATTTCTAAGGAAGGCG
AGGAAGAATATGGATTTTACAGCACATTAGGAAAATCGTTTCGTTCCTGGTTTTTCTCCAGATCTTTGGA
TGAATCGACTCTGAGGAAGCAAATTGAAAGAGTAAGACCCTTGAAAAACACAGAAGTTTGGGCCAGTAGC
ACTGTAACAGTCCAGCCTTCCAGACACTCTAGTTTAGACTTTGATCACCAAGAGCCATTTTCAACAAAAG
GGCAAAGTTTAGATGAGGAAGTGTTTGTGGAATCTTCTTCTGGAAAACACTTGGAGTGGCTGAGAGCACC
AGGCACTCTGAAACATTTAAATGGAGACCATCAAGGGGAAATGAGGAGAAATGGAGGGGGAAATTTTCTG
GATAGCACTAATACTGGTGTGAATTGTGTGGATGCAGGCAACATAGAAGATGATAATCCTTCTGCTAGTA
AAATATTGAGAAGGATTTCTGCAGTTGATTCCACAGATTTCAACCCAGATGATACAATGTCTGTCGAAGA
TCCACAGACTGATGTTTTGGACTCCACAGCCTTTATGCGCTACTACCATGTGTTTCGAGAAGGGGAGCTC
TGCAGTCTGCTCAAGGAGAATGTGTCAGAGCTCCGTATCCTGAGTTCTGGGAATGATCATGGTAACTGGT
GTATCATTGCAGAGAAAAAGAGAGGTTGTGATTGA

Translation (454 aa):
MDHEAAQLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVHTVGC
DYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIY
VWAMEQKNRHFEKQDVLVPWNRALCSQLFSESSQSGRKRQCGYPERGHPYHPPCSECSCSVCFKEQCGSK
RSHSVGYEPAMARTCFANISKEGEEEYGFYSTLGKSFRSWFFSRSLDESTLRKQIERVRPLKNTEVWASS
TVTVQPSRHSSLDFDHQEPFSTKGQSLDEEVFVESSSGKHLEWLRAPGTLKHLNGDHQGEMRRNGGGNFL
DSTNTGVNCVDAGNIEDDNPSASKILRRISAVDSTDFNPDDTMSVEDPQTDVLDSTAFMRYYHVFREGEL
CSLLKENVSELRILSSGNDHGNWCIIAEKKRGCD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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