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Report for CCDS39010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39010.1 Public Mus musculus 5 Slc25a40 23 108 98 CCDS HistoryNCBI Gene:319653Re-query CCDS DB by CCDS ID:39010.1Re-query CCDS DB by GeneID:319653See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066921.9 ENSMUSP00000067611.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066921.9Link to Ensembl Protein Viewer:ENSMUSP00000067611.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066921Re-query CCDS DB by Protein ID:ENSMUSP00000067611
Original member Current member EBI ENSMUST00000170496.5 ENSMUSP00000130630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170496.5Link to Ensembl Protein Viewer:ENSMUSP00000130630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170496Re-query CCDS DB by Protein ID:ENSMUSP00000130630
Original member Current member NCBI NM_001289595.1 NP_001276524.1 Accepted alive Link to Nucleotide Sequence:NM_001289595.1Link to Protein Sequence:NP_001276524.1Re-query CCDS DB by Nucleotide ID:NM_001289595Re-query CCDS DB by Protein ID:NP_001276524Link to BLAST:NP_001276524.1
Original member Current member NCBI NM_178766.5 NP_848881.2 Accepted alive Link to Nucleotide Sequence:NM_178766.5Link to Protein Sequence:NP_848881.2Re-query CCDS DB by Nucleotide ID:NM_178766Re-query CCDS DB by Protein ID:NP_848881Link to BLAST:NP_848881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276524.1 337 Q8BGP6-1 337 100% 0 0
NP_848881.2 337 Q8BGP6-1 337 100% 0 0

Chromosomal Locations for CCDS 39010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8427417 8427516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8428629 8428688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8430412 8430518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8440721 8440788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8442447 8442571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8443612 8443785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8447298 8447407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8449613 8449694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8452746 8452826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8453192 8453298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAGCCTGAAACTGAAGGGCCGCCACCAACAATCCCAGTGACTCCTCTTCAGCAAATGATTGCCTCCT
GTACTGGAGCTGTACTGACATCACTAATGGTGACTCCCCTGGATGTTGTTAAAATTCGACTCCAGGCCCA
GAACAACCCATTCCCCAAAGGAAAGTGTTTTTTATACAGTAATGGACTCATGGATCACATGTGTGTCTGT
GAAGAGGAGAGCAAGAAAGCATGGTATAAGAAGCCAGGAAACTTCCGTGGGACATTGGATGCCTTTTTAA
AAATTCTTCGAAATGAGGGCATAAAATCCCTGTGGAGCGGCCTCCCTCCTACTCTAGTGATGGCAATTCC
TGCCACAGTTATTTATTTTACCTGCTATGAACAGTTAAGTGCTTTTCTGAAAACCAAATTAGGAGAAAAT
GAAACCCGAATACCAATAGTTGCTGGGGTTGTCGCCAGATTTGGTGCGGTAACAGTGATCAGTCCATTAG
AATTGATCAGAACTAAGGTGCAGTCTAAGAAGTTTTCTTACAAGGAATTATATCAATTTGTGAGCATGAG
AGTGTCTGAAGATGGTTGGATTTCCCTTTGGAAGGGCTGGGCTCCTACGATTCTTAGAGATGTGCCTTTC
TCAGCAATGTACTGGTATAATTATGAAAATTTAAAGAGGTGGCTTTGTGAGAAATCTGGTTTATATGAAC
CAACATTTATGATCAACTTTACTTCAGGAGCATTGTCTGGTTCTTTTGCAGCTGTTGCAACTTTACCATT
TGATGTAGTAAAAACACAGAAACAGACGCAACTGTGGACGAATGAATATTGTAAATTTCCTGCACCTTTG
GATATGTCAACCTGGACTATAATGAAGAACATTGTTGCTGACAAAGGATTTTCTGGGTTATTTACAGGTC
TAATTCCTCGATTAGTTAAAATTGTTCCTGCTTGTGCCATTATGATCAGTTCATATGAATTAGGAAAGTC
GTTCTTCCAGAAGCAAAATGTTGAAAGTCGGTAA

Translation (337 aa):
MEPETEGPPPTIPVTPLQQMIASCTGAVLTSLMVTPLDVVKIRLQAQNNPFPKGKCFLYSNGLMDHMCVC
EEESKKAWYKKPGNFRGTLDAFLKILRNEGIKSLWSGLPPTLVMAIPATVIYFTCYEQLSAFLKTKLGEN
ETRIPIVAGVVARFGAVTVISPLELIRTKVQSKKFSYKELYQFVSMRVSEDGWISLWKGWAPTILRDVPF
SAMYWYNYENLKRWLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQLWTNEYCKFPAPL
DMSTWTIMKNIVADKGFSGLFTGLIPRLVKIVPACAIMISSYELGKSFFQKQNVESR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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