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Report for CCDS19506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19506.1 Public Mus musculus 5 Rpap2 23 108 98 CCDS HistoryNCBI Gene:231571Re-query CCDS DB by CCDS ID:19506.1Re-query CCDS DB by GeneID:231571See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065422.11 ENSMUSP00000070209.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065422.11Link to Ensembl Protein Viewer:ENSMUSP00000070209.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065422Re-query CCDS DB by Protein ID:ENSMUSP00000070209
Original member Current member NCBI NM_144911.3 NP_659160.2 Accepted alive Link to Nucleotide Sequence:NM_144911.3Link to Protein Sequence:NP_659160.2Re-query CCDS DB by Nucleotide ID:NM_144911Re-query CCDS DB by Protein ID:NP_659160Link to BLAST:NP_659160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659160.2 614 Q8VC34-1 614 100% 0 0

Chromosomal Locations for CCDS 19506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107597788 107597860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107598522 107598567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107601731 107601845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107603526 107603624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107603821 107603886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107606905 107606993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107618141 107618176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107619822 107620755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107623702 107623796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107625888 107625968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107633063 107633131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107655157 107655298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGCTGACTCTGCCGTACCTTGCTCTCTAGGCCCAAGTACCCGGGCTTCCAGCACCCACCGAGATGCTA
CCGGTACTAAACAGACCCGAGCCCTGAAACGAGGAGATGCATCTAAAAGGCAAGCAGAACTGGAAGCTGC
TATACAAAGGAAGGTGGAGTTTGAAAGGAAAGCTGTGCGCATCGTAGAGCAGCTCTTAGAGGAGAACATC
ACAGAAGAATTCCTGAAGGAGTGTGGCATGTTCATCACACCAGCTCACTACAGCGACGTTGTGGATGAGC
GGTCCATCATCAAACTCTGTGGCTATCCTTTGTGTCAGAAGAAGCTAGGGGTTATCCCGAAACAGAAATA
TCGAATTTCTACTAAAACCAATAAAGTCTATGATATTACTGAAAGGAAGTCTTTCTGCAGCAATTTTTGT
TACAGAGCATCTAAATTTTTTGAAACACAGATTCCCAAAACTCCAGTATGGGTTCGAGAGGAAGAGAGGC
CTCCTGACTTTCAGCTGCTGAAGAAAGGACAAAGCGGCAGTTCTGGAGAAGTAGTACAGTTCTTCCGAGA
TGCCGTGACAGCAGCAGATGTTGACGGTTCCGGCGCCTTGGAGGCGCAGTGTGACCCTGCTTCTTCCAGC
TCTTGGAGTGAGCGAGCCAGTGATGAGGAGGAGCAAGGCTTTGTTTCTTCTCTTCTACCAGGAAACAGAC
CAAAGGCAGTGGATACAAGACCGCAGCCGCACACAAAAAGCAGCATCATGAGAAAGAAGGCTGCTCAGAA
CGTGGACTCCAAGGAGGGAGAGCAGACCGTGTCAGAGGTTACCGAGCAGCTGGATAATTGCAGATTAGAT
AGTCAGGAGAAAGTGGCCACTTGTAAACGTCCTTTAAAGAAAGAAAGTACTCAGATTTCTTCACCTGGCC
CTTTGTGTGACAGATTTAACACTTCAGCCATTTCTGAACATAAACACGGTGTATCACAAGTTACGCTTGT
AGGCATAAGCAAGAAGAGTGCTGAGCATTTCAGGAGCAAATTTGCCAAGTCAAATCCAGGTTCTGGGTCA
GCCTCTGGTTTGGTACACGTGCGTCCTGAGGTTGCGAAGGCAAATTTACTCCGAGTTCTGTCGGACACTC
TGACTGAATGGAAGACAGAAGAAACACTGAAGTTTTTATATGGCCAGAACCACGATTCTGTGTGTCTGAA
ACCCTCTTCAGCCTCTGAGCCTGATGAAGAACTTGATGAAGATGACATAAGTTGTGACCCAGGTAGTTGT
GGTCCTGCCCTGAGTCAAGCTCAGAACACCCTAGATGCAACACTGCCCTTTAGAGGCTCAGACACAGCCA
TTAAGCCACTGCCAAGTTATGAGAGCTTGAAAAAGGAAACGGAGATGCTGAACCTGAGGGTCAGGGAGTT
CTACAGAGGGCGCTGTGTTTTAAATGAAGACACTACCAAGTCTCAGGACTCTAAAGAGAGTGTGCTTCAG
CGTGACCCCAGCTTCCCGCTGATAGATTCAAGTTCCCAGAACCAGATTAGAAGACGGATTGTTCTTGAAA
AACTGAGCAAAGTATTGCCTGGACTTTTGGGTCCTCTTCAGATTACAATGGGAGATATTTACACTGAACT
TAAAAACCTCATTCAGACTTTCAGATTATCAAATAGAAACATTATACACAAACCTGTGGAGTGGACTTTA
ATTGCTGTGGTCTTGCTGTTACTATTGACACCGATTCTTGGCATTCAGAAGCATTCTCCGAAAAATGTGG
TTTTTACACAGTTTATAGCCACCCTGCTGACAGAATTGCATTTAAAATTCGAAGATCTTGAAAAATTAAC
CATGATATTTAGAACCAGCTGCTAG

Translation (614 aa):
MADSAVPCSLGPSTRASSTHRDATGTKQTRALKRGDASKRQAELEAAIQRKVEFERKAVRIVEQLLEENI
TEEFLKECGMFITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFC
YRASKFFETQIPKTPVWVREEERPPDFQLLKKGQSGSSGEVVQFFRDAVTAADVDGSGALEAQCDPASSS
SWSERASDEEEQGFVSSLLPGNRPKAVDTRPQPHTKSSIMRKKAAQNVDSKEGEQTVSEVTEQLDNCRLD
SQEKVATCKRPLKKESTQISSPGPLCDRFNTSAISEHKHGVSQVTLVGISKKSAEHFRSKFAKSNPGSGS
ASGLVHVRPEVAKANLLRVLSDTLTEWKTEETLKFLYGQNHDSVCLKPSSASEPDEELDEDDISCDPGSC
GPALSQAQNTLDATLPFRGSDTAIKPLPSYESLKKETEMLNLRVREFYRGRCVLNEDTTKSQDSKESVLQ
RDPSFPLIDSSSQNQIRRRIVLEKLSKVLPGLLGPLQITMGDIYTELKNLIQTFRLSNRNIIHKPVEWTL
IAVVLLLLLTPILGIQKHSPKNVVFTQFIATLLTELHLKFEDLEKLTMIFRTSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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