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Report for CCDS27840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27840.1 Public Mus musculus 15 Tfcp2 23 108 98 CCDS HistoryNCBI Gene:21422Re-query CCDS DB by CCDS ID:27840.1Re-query CCDS DB by GeneID:21422See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229696.1 ENSMUSP00000155683.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229696.1Link to Ensembl Protein Viewer:ENSMUSP00000155683.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229696Re-query CCDS DB by Protein ID:ENSMUSP00000155683
Original member Current member NCBI NM_033476.3 NP_258437.1 Accepted alive Link to Nucleotide Sequence:NM_033476.3Link to Protein Sequence:NP_258437.1Re-query CCDS DB by Nucleotide ID:NM_033476Re-query CCDS DB by Protein ID:NP_258437Link to BLAST:NP_258437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_258437.1 502 Q9ERA0-1 502 100% 0 0

Chromosomal Locations for CCDS 27840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100504406 100504443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100506206 100506257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100511695 100511837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100512209 100512333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100513081 100513171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100514029 100514122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100514804 100514852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100517950 100518038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100518570 100518680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100520563 100520715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100522389 100522495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100525567 100525672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100527877 100527953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100528395 100528546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100551325 100551446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCCTGGGCTCTGAAGCTGCCGCTAGCCGACGAAGTGATCGAGTCGGGGCTTGTGCAGGACTTTGATG
CTAGCCTGTCCGGCATTGGCCAGGAACTGGGTGCTGGTGCTTATAGTATGAGTGATGTCCTCGCATTGCC
CATTTTTAAGCAAGAAGAGTCAAGTTTGCCTCCCGATAATGAGAACGAGATTCTGCCTTTTCAGTATGTG
CTCTGTGCTGCCACGTCTCCAGCGGTGAAGCTCCACGACGAGACCCTGACGTACCTCAATCAAGGACAGT
CTTATGAAATCCGAATGCTAGACAATAGAAAACTGGGAGAGCTTCCAGAACTCAACGGCAAGCTGGTGAA
GAGCATATTCCGCGTAGTGTTCCACGACAGGCGACTGCAGTACACTGAGCACCAGCAGCTGGAGGGCTGG
AGGTGGAACCGACCGGGAGACAGGATTCTCGACATAGATATCCCAATGTCTGTGGGTGTAATTGATCCCA
GGGCCAATCCTACCCAGCTAAACACAGTGGAGTTCCTGTGGGACCCTTCAAAGAGGACATCTGTGTTTAT
TCAGGTGCACTGCATCAGCACTGAGTTCACCATGAGGAAGCATGGCGGGGAGAAGGGGGTGCCGTTCCGA
GTGCAGATCGATACCTTCAAGGAGAACGGGAACGGAGAGTACACAGAGCACTTGCACTCGGCCAGCTGCC
AGATCAAAGTCTTCAAGCCTAAGGGTGCAGACAGAAAACAAAAAATAGATAGAGAGAAAATGGAGAAACG
GACGCCCCATGAAAAAGAGAAATATCAACCTTCTTATGAGACAACCATACTCACCGAGTGTTCTCCGTGG
CCTGAGATCACCTACGTCAACAATTCCCCATCCCCTGGCTTCAACAGCTCCCATAGCAGTTTCTCTCTTG
GGGAAGGAAACGGCTCGCCCAACCACCAGCCAGAACCACCCCCTCCAGTCACGGATAACCTCTTGCCGAC
AACCACGCCTCAGGAAGCCCAGCAATGGCTGCATCGAAACCGGTTCTCCACATTCACGAGGCTTTTCACC
AACTTCTCAGGGGCAGATTTACTGAAACTAACTAGAGACGACGTGATCCAAATCTGCGGCCCTGCAGATG
GAATCAGACTCTTTAATGCATTAAAAGGCCGGATGGTGCGGCCAAGGCTAACCATTTATGTCTGCCAGGA
GTCGTTGCAGTTGAGGGAGCAGCAGCCGCAGCCGCAGCCGCAGCCGCAGAAGCAGGAGGATGGGGATTCA
AACGGTACTTTCTTCGTGTACCATGCTATCTATCTCGAGGAGCTGACAGCTGTCGAACTCACAGAAAAAA
TTGCTCAGCTTTTCAGCATTTCTCCTCACCAGATCAGCCAGATTTACAAGCAAGGGCCGACAGGGATCCA
TGTGGTCATCAGCGATGAGATGGTACAGAACTTCCAGGAAGAAGCCTGCTTTATTCTGGACACGATGGAA
GCAGAAACCAGTGACAGCTATCATGTCATTCTCAAGTAG

Translation (502 aa):
MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDNENEILPFQYV
LCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPELNGKLVKSIFRVVFHDRRLQYTEHQQLEGW
RWNRPGDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEKGVPFR
VQIDTFKENGNGEYTEHLHSASCQIKVFKPKGADRKQKIDREKMEKRTPHEKEKYQPSYETTILTECSPW
PEITYVNNSPSPGFNSSHSSFSLGEGNGSPNHQPEPPPPVTDNLLPTTTPQEAQQWLHRNRFSTFTRLFT
NFSGADLLKLTRDDVIQICGPADGIRLFNALKGRMVRPRLTIYVCQESLQLREQQPQPQPQPQKQEDGDS
NGTFFVYHAIYLEELTAVELTEKIAQLFSISPHQISQIYKQGPTGIHVVISDEMVQNFQEEACFILDTME
AETSDSYHVILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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