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Report for CCDS34202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34202.1 Public Homo sapiens 5 ARRDC3 24 110 108 CCDS HistoryNCBI Gene:57561Re-query CCDS DB by CCDS ID:34202.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265138.4 ENSP00000265138.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265138.4Link to Ensembl Protein Viewer:ENSP00000265138.3Re-query CCDS DB by Nucleotide ID:ENST00000265138Re-query CCDS DB by Protein ID:ENSP00000265138
Original member Current member NCBI NM_020801.4 NP_065852.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020801.4Link to Protein Sequence:NP_065852.1Re-query CCDS DB by Nucleotide ID:NM_020801Re-query CCDS DB by Protein ID:NP_065852Link to BLAST:NP_065852.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065852.1 414 Q96B67 414 100% 0 0

Chromosomal Locations for CCDS 34202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 91371400 91371456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91373684 91373838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91374114 91374276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91374922 91375178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91375511 91375613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91376621 91376768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91378694 91378775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91382813 91383092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGTGCTGGGAAAGGTGAAGAGTTTGACAATAAGCTTTGACTGTCTTAATGACAGCAATGTCCCTGTGT
ATTCTAGTGGGGATACCGTCTCAGGAAGGGTAAATTTAGAAGTTACTGGGGAAATCAGAGTAAAATCTCT
TAAAATTCATGCAAGAGGACATGCGAAAGTACGCTGGACTGAATCTAGAAACGCCGGCTCCAATACTGCC
TATACACAGAATTACACTGAAGAAGTAGAGTATTTCAACCATAAAGACATCTTAATTGGGCACGAAAGAG
ATGATGATAATTCCGAAGAAGGCTTCCACACTATTCATTCAGGAAGGCATGAATATGCATTCAGCTTCGA
GCTTCCACAGACACCACTCGCTACCTCATTCGAAGGCCGACATGGCAGTGTGCGCTATTGGGTGAAAGCC
GAATTGCACAGGCCTTGGCTACTACCAGTAAAATTAAAGAAGGAATTTACAGTCTTTGAGCATATAGATA
TCAACACTCCTTCATTACTGTCACCCCAAGCAGGCACAAAAGAAAAGACACTCTGTTGCTGGTTCTGTAC
CTCAGGCCCAATATCCTTAAGTGCCAAAATTGAAAGGAAGGGCTATACCCCAGGTGAATCAATTCAGATA
TTTGCTGAGATTGAGAACTGCTCTTCCCGAATGGTGGTGCCAAAGGCAGCCATTTACCAAACACAGGCCT
TCTATGCCAAAGGGAAAATGAAGGAAGTAAAACAGCTTGTGGCTAACTTGCGTGGGGAATCCTTATCATC
TGGAAAGACAGAGACGTGGAATGGCAAGTTGCTGAAAATTCCACCAGTTTCTCCCTCTATCCTCGACTGT
AGTATAATCCGCGTGGAATATTCACTAATGGTATATGTGGATATTCCTGGAGCTATGGATTTATTTCTTA
ATTTGCCACTTGTCATCGGTACCATTCCTCTACATCCATTTGGTAGCAGAACCTCAAGTGTAAGCAGTCA
GTGTAGCATGAATATGAACTGGCTCAGTTTATCACTTCCTGAAAGACCTGAAGCACCACCCAGCTATGCA
GAAGTGGTAACAGAGGAACAAAGGCGGAACAATCTTGCACCAGTGAGTGCTTGTGATGACTTTGAGAGAG
CCCTTCAAGGACCACTGTTTGCATATATCCAGGAGTTTCGATTCTTGCCTCCACCTCTTTATTCAGAGAT
TGATCCAAATCCTGATCAGTCAGCAGATGATAGACCATCCTGCCCCTCTCGTTGA

Translation (414 aa):
MVLGKVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRNAGSNTA
YTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIHSGRHEYAFSFELPQTPLATSFEGRHGSVRYWVKA
ELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCCWFCTSGPISLSAKIERKGYTPGESIQI
FAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDC
SIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPSYA
EVVTEEQRRNNLAPVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDPNPDQSADDRPSCPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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