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Report for CCDS71593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71593.1 Public Mus musculus 5 Tbc1d1 23 108 98 CCDS HistoryNCBI Gene:57915Re-query CCDS DB by CCDS ID:71593.1Re-query CCDS DB by GeneID:57915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119756.5 ENSMUSP00000113643.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119756.5Link to Ensembl Protein Viewer:ENSMUSP00000113643.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119756Re-query CCDS DB by Protein ID:ENSMUSP00000113643
Original member Current member NCBI NM_001289514.1 NP_001276443.1 Accepted alive Link to Nucleotide Sequence:NM_001289514.1Link to Protein Sequence:NP_001276443.1Re-query CCDS DB by Nucleotide ID:NM_001289514Re-query CCDS DB by Protein ID:NP_001276443Link to BLAST:NP_001276443.1

Chromosomal Locations for CCDS 71593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64230501 64230530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64256715 64257155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64260353 64260442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64263469 64263579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64264326 64264458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64271090 64271181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64275395 64275505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64277916 64278044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64279331 64279417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64281765 64282045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64285945 64286084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64311059 64311244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64316354 64316515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64324451 64324609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64333347 64333591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64335278 64335437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64339562 64339731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64345252 64345425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64349730 64349930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3102 nt):
ATGTCACCATTGTTCAGCTGGGTGGCCAAGGTGCCTGAGATCATCAGCTCCATCCGGCAGGCCGGGAAGA
TTGCCCGCCAGGAAGAGCTGCGTTGCCCCTCCGAGTTCGACGATACCTTCGCCAAAAAGTTCGAGGTGCT
CTTCTGTGGCCGGGTGACTGTGGCTCACAAGAAGGCCCCACCCGCACTGATTGACGAGTGTATCGAGAAG
TTCAACCATGTGAGCTGTGGTCGCAGAACGGACTGGGAAGCGCCCACCGGGCAGCCATCAGCGCCTGGCC
CCAGGCCCATGCGCAAATCCTTCTCACAGCCTGGACTGCGCTCGCTGGCCTTCAGGAAGGAGTTCCAGGA
CGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTTTGACAATGACATAGAGAACCACCTCATCGGTGGGCAC
AATGTGGTTCAGCCCACAGACATGGAGGAGAACCGAACTATGCTGTTCACGATTGGCCAATCTGAAGTTT
ACCTCATCAGTCCTGACACCAAAAAGATTGCACTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCA
GGGCATCAGACATGTGGACCACTTTGGATTCATCTGCCGAGAGTGCTCGGGTGGCGGCAGTGGCGGCTTT
CATTTTGTCTGTTACGTGTTCCAGTGCACAAATGAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGC
AGGCTTTCACGGTAGCTGCGGTGCAGCAGACGGCTAAGGCACCAGCCCAGCTCTGTGAGGGCTGCCCCTT
GCAAGGCCTGCACAAGCTCTGCGAAAGGATAGAGGGAATGAATTCATCTAAAACCAAATTAGAACTCCAG
AAGCACTTGACCACACTGACCAATCAGGAGCAGGCCACCATATTCGAGGAGGTTCAGAAATTGAGACCAA
GAAACGAGCAGCGAGAGAATGAATTAATTATTTCTTTTCTGAGGTGCTTATATGAAGAGAAGCAAAAAGA
GCACAGCCACACTGGGGAGCCAAAGCAGACACTACAGGTGGCAGCAGAGAATATTGGGAGTGACCTGCCA
CCCAGTGCTAGCCGGTTCAGGTTAGATTCGCTGAAGAACAGAGCAAAGAGGTCCTTAACAGAGTCCCTAG
AGAGCATTCTGTCCCGGGGTAATAAAGCCAGAGGCCTGCAGGACCATTCCGCCAGTGTGGATCTGGACAG
CTCCACTTCTAGTACTCTAAGTAACACCAGCAAAGAGCTGTCCATGGGTGACAAGGAGGCCTTCCCCGTC
TCTGAGACCTCCTTCAAGCTCCTTGGCTCCTCAGATGACCTGTCCAGTGACTCAGAGGGCCACATTGCAG
AAGAGTCTGCCCTGTTGTCACCCCAGCAGGCGTTCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGT
AGAGTGCCCTGCGCCTCCAGAACCTGCCCAGAGCTCTCCAGGGGTCTCTCAAAGGAAACTCATGCGGTAC
CACTCCGTGAGCACAGAGACGCCTCATGAACGCAAGGACTTTGAATCCAAAGCAAACCACCTGGGTGACA
CAGATGGGACCCCCGTGAAGACCCGGCGGCACTCGTGGAGACAGCAGATATTCCTTCGAGTGGCCACTCC
ACAGAAGGCTTGTGACTCCCCGAGCAGATATGAAGATTATTCCGAGCTGGGAGAGCTCCCTCCACGCTCC
CCTTTAGAACCGGTGTGTGAGGACGGCCCATTTGGCCCAGTACAGGAAGAAAAGAGGAAGACGTCACGCG
AGCTTCGAGAGCTGTGGAAAAAGGCCATCTTGCAGCAGATCCTGCTGCTCAGGATGGAGAAGGAGAATCA
GAAGCTACAAGCCTCTGAAAACGATTTGCTGAACAAACGCCTCAAGCTTGACTATGAAGAAATCACTCCG
TGTCTTAAAGAAGTCACTACAGTGTGGGAAAAGATGCTTAGCACTCCAGGAAGATCCAAAATTAAGTTTG
ACATGGAAAAAGTGCACTCAGCTGTTGGGCAAGGTGTGCCACGTCATCACCGAGGTGAGATCTGGAAATT
TCTAGCTGAGCAGTTCCACCTTAAACACCCATTTCCTAGTAAACAGCAGCCAAAGGACGTGCCCTACAAA
GAGCTCCTGAAGAAGCTGACCTCGCAGCAGCACGCCATTCTCATCGACCTCGGGCGAACCTTTCCAACAC
ATCCATACTTCTCTGCCCAGCTTGGAGCAGGTCAGCTGTCACTTTACAACATTCTGAAGGCCTACTCGCT
TCTGGACCAGGAGGTTGGATACTGCCAAGGTCTCAGCTTTGTGGCAGGCATTTTGCTTCTTCACATGAGT
GAGGAAGAGGCGTTCAAGATGCTCAAGTTCCTGATGTTTGACATGGGGCTGCGGAAACAGTATCGGCCAG
ACATGATTATTTTGCAGATCCAGATGTACCAGCTGTCACGGCTCCTCCACGATTACCACCGAGACCTCTA
CAACCACCTGGAAGAGCACGAGATCGGCCCCAGCCTCTACGCGGCTCCCTGGTTTCTCACTGTGTTCGCC
TCACAGTTCCCACTCGGCTTTGTAGCCAGAGTCTTTGATATGATCTTCCTTCAGGGATCAGAGGTCATAT
TTAAAGTAGCTTTAAGTCTTTTGGGGAGCCATAAGCCCTTGATTCTACAGCATGAGAACCTGGAAACCAT
AGTGGACTTCATAAAGAACACACTCCCCAACCTGGGCCTGGTGCAGATGGAGAAGACCATCAGTCAGGTG
TTTGAGATGGACATCGCCAAGCAGCTCCAGGCCTATGAGGTCGAGTACCACGTGCTCCAGGAGGAGCTTA
TTGAGTCCTCGCCTCTCAGTGACAACCAAAGAATGGAGAAATTGGAGAAAACCAACAGCAGCTTGCGCAA
ACAGAACCTTGACCTCCTGGAGCAGTTGCAGGTGGCAAATGCTAGGATCCAAAGCCTTGAAGCCACGGTA
GAGAAACTTCTTACCAGCGAGAGTAAGCTGAAGCAGGCTGCGCTGACCCTGGAGGTGGAGCGCTCCGCCC
TGCTGCAGATGGTGGAGGAGCTGCGGAGGCAAAGCGCCCGGCCCAGCACTCCAGAGCCAGACTGCACCCA
GCTGGAGCCCACAGGCGATTGA

Translation (1033 aa):
MSPLFSWVAKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPALIDECIEK
FNHVSCGRRTDWEAPTGQPSAPGPRPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSSFDNDIENHLIGGH
NVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRECSGGGSGGF
HFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCPLQGLHKLCERIEGMNSSKTKLELQ
KHLTTLTNQEQATIFEEVQKLRPRNEQRENELIISFLRCLYEEKQKEHSHTGEPKQTLQVAAENIGSDLP
PSASRFRLDSLKNRAKRSLTESLESILSRGNKARGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEAFPV
SETSFKLLGSSDDLSSDSEGHIAEESALLSPQQAFRRRANTLSHFPVECPAPPEPAQSSPGVSQRKLMRY
HSVSTETPHERKDFESKANHLGDTDGTPVKTRRHSWRQQIFLRVATPQKACDSPSRYEDYSELGELPPRS
PLEPVCEDGPFGPVQEEKRKTSRELRELWKKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITP
CLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPKDVPYK
ELLKKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS
EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTVFA
SQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPNLGLVQMEKTISQV
FEMDIAKQLQAYEVEYHVLQEELIESSPLSDNQRMEKLEKTNSSLRKQNLDLLEQLQVANARIQSLEATV
EKLLTSESKLKQAALTLEVERSALLQMVEELRRQSARPSTPEPDCTQLEPTGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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