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Report for CCDS20273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20273.1 Public Mus musculus 6 Mogs 23 108 98 CCDS HistoryNCBI Gene:57377Re-query CCDS DB by CCDS ID:20273.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032114.7 ENSMUSP00000032114.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032114.7Link to Ensembl Protein Viewer:ENSMUSP00000032114.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032114Re-query CCDS DB by Protein ID:ENSMUSP00000032114
Original member Current member NCBI NM_020619.3 NP_065644.2 Accepted alive Link to Nucleotide Sequence:NM_020619.3Link to Protein Sequence:NP_065644.2Re-query CCDS DB by Nucleotide ID:NM_020619Re-query CCDS DB by Protein ID:NP_065644Link to BLAST:NP_065644.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065644.2 834 Q80UM7 834 100% 0 0

Chromosomal Locations for CCDS 20273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83115581 83115926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83116019 83116248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83116628 83116824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83116977 83118708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCCCGGGGCGAGAGGCGACGGCGCGCTGCGGCCGCAGAGGGGGCGCGGCCGCTGGAGAGGGCGCGGG
CGGCGGGCCGGCGGGATGGCAGGGCTGGTGGGGCGCGGGGCTCGGCGAGCGGCGCGGCCCTGGCCGTGGT
GGTGTTGGCGCTGGCCTTCGGCCTGTCGGGGCGCTGGGTGCTGGCGTGGCTCCGTGTGCGCCGCGCGCTC
ACACTGCACCCCGCGCCGTCTGCGCTGCCGCCGGACTCCTCCAGTCCTGCCGTGGCCCCGGAACTCTTCT
GGGGCACCTACCGCCCACACGTCTATTTCGGCATGAAGACTCGCAGCCCCAAACCACTGCTCACAGGACT
GATGTGGGCACAGCAAGGCGCCACCCCGGGGACCCCTCCTAAGCTCAGGCACACGTGTGAACAGGGAGAC
GGCGTGGGTCCCTATGGCTGGGAGTTCCACGATGGCCGCACCTTCGGTCGGCAGCATATCCACGATGGGG
CCTTAAGGCTCACCACTGAGTTCGTCAAGAGGCCTGGGGGTCAGCACGGAGGGGATTGGAGCTGGAGAGT
GACCGTAGAGCCTCAGGCCTCAGGTACACCTTCCTTCCCTTTGGTGTCCCTGTTCTTCTACGTGGTGACA
GATGGGCAAGAGGTCCTACTACCAGAGATCGGAGCCAAAGGACAGTTGAAGTCCATCAGTGGGCACACCA
GTGAACTTGGTGACTTCCGCCTCACACTTCTGCCGCCAACCAGTCCAGGAGACACTGTCCCTAAGCATGG
CAGCTACAATGTCTTCTGGTCCTCCAACCCGGGGCTGCCACAGCTCACAGATATGGTAAAGAGCCGCCTA
AACAGCTGGTTTCAGCACCGGCCCCCAGGAGCCTCTCCTGACCGCTACCTCGGCTTGCCTGGATCTCTGA
AGTGGGAGGAGAGAGGCCCTAGTGGGCAAGGGCAATTCTTGATCCAGCAGGTGACACTGAAAGCCCCTTT
CTCTGTGGAGTTTGTGTTTGAATCTGGCAGTGCGGCAACAGGAGGAAACCAAGCCTCTGGGCGGCTGGTA
GGCAGCCAACTGACCCAGGCCCTGGAGAGCCATGCTGCAGCCTTCAAGGAACGGTTTGAGAAGACCTTCC
AGCTAAAGGAGAAGGGCTTGAGTCCCGAGGAACAGGCTTTGGGTCAGGTTGCCCTCAGTGGCCTTCTTGG
TGGGATTGGTTACTTCTATGGACAGGGTTTAGTGTTGCCAGACACTAGCATGGAAGGGTCTGAACAGAAA
ATGGACCCTGCCCTGTTTCCACCTGTCCCTCTTTTCTCTGGGGTGCCTTCTAGGTCATTCTTCCCACGAG
GCTTCCTCTGGGATGAAGGCTTTCACCAGCTAGTGGTCCAGCGATGGGATCCCCACCTCACCCGGGAGGC
CCTAGGACACTGGCTGGGGCTGCTCAATGCTGACGGCTGGATTGGGCGAGAGCAGATTCTGGGGGATGAG
GCCAGAGCCCGAGTGCCCCCAGAATTCCTAGTGCAACGGGCAGCCCATGCCAACCCCCCAACCCTGCTCC
TGCCAGTCGTACACATGCTAGAAGGCCATGACCCTGATGATTTGGCCTTTCTCCGCAAGGCTTTCCCCCG
CCTGCATGCCTGGTTCTCTTGGCTCCATCAAAGTCAGGCAGGGCCAGTGCCACTATCCTACCGCTGGCGG
GGCAGGGACCTAGCTTTGCCTACCCTACTTAACCCCAAGACGCTGCCCTCAGGCCTGGATGACTACCCTA
GGGCCTCGCATCCTTCCACAGCAGAGCGGCACCTGGACCTGCGCTGCTGGGTGGCACTGGGTGCCCGGGT
GCTGTCCCAGCTTGCAGAACAGCTTGGGGAGACTGAAGCTGCTGCAGAGCTGGGCCCATTGGCTGCCTCT
CTAGAAGAACCTGGAAGTCTTGATGAGCTGCACTGGGCTCCTGAGCTGGGGGTCTTTGCTGACTTTGGGA
ACCACACAAAAGCAGTACAGCTCAAGTCGAGGCCCCCACAGGGGCTGGTTAGGGTGGTAGGCAGGCCTCC
ACCTCGATTACAGTATGTGGATGCCCTGGGCTATGTCTCTCTTTTTCCTTTGCTACTACAGCTGCTGGAC
CCCAGCTCACCCCGCTTAGGACCCCTGCTAGACGTTCTAGCTGATAGTCGCCATCTCTGGAGCCCTTTTG
GGTTGCGCTCTCTTTCAGCCTCTAGCCTCTTTTATAAACAGCGTAACACTGAGCACGATCCACCCTACTG
GCGAGGTGCCGTGTGGCTGAATATTAACTACCTAGCTTTGGGGGCACTACATCACTATGGGCATGTGGAG
GGTCCTCACAAGGTTCAGGCTGCCAAACTCTACCATGAACTGCGGGCCAATGTAGTGAGAAACGTCCGCC
AGCAATACCAGGCTACCGGATTTCTGTGGGAGCAGTACAGTGACCAGGATGGGCGGGGCATGGGCTGCCG
CCCCTTCCAAGGATGGACCAGTCTTGTCTTACTGATCATGGCTGAAGAGTACTAA

Translation (834 aa):
MARGERRRRAAAAEGARPLERARAAGRRDGRAGGARGSASGAALAVVVLALAFGLSGRWVLAWLRVRRAL
TLHPAPSALPPDSSSPAVAPELFWGTYRPHVYFGMKTRSPKPLLTGLMWAQQGATPGTPPKLRHTCEQGD
GVGPYGWEFHDGRTFGRQHIHDGALRLTTEFVKRPGGQHGGDWSWRVTVEPQASGTPSFPLVSLFFYVVT
DGQEVLLPEIGAKGQLKSISGHTSELGDFRLTLLPPTSPGDTVPKHGSYNVFWSSNPGLPQLTDMVKSRL
NSWFQHRPPGASPDRYLGLPGSLKWEERGPSGQGQFLIQQVTLKAPFSVEFVFESGSAATGGNQASGRLV
GSQLTQALESHAAAFKERFEKTFQLKEKGLSPEEQALGQVALSGLLGGIGYFYGQGLVLPDTSMEGSEQK
MDPALFPPVPLFSGVPSRSFFPRGFLWDEGFHQLVVQRWDPHLTREALGHWLGLLNADGWIGREQILGDE
ARARVPPEFLVQRAAHANPPTLLLPVVHMLEGHDPDDLAFLRKAFPRLHAWFSWLHQSQAGPVPLSYRWR
GRDLALPTLLNPKTLPSGLDDYPRASHPSTAERHLDLRCWVALGARVLSQLAEQLGETEAAAELGPLAAS
LEEPGSLDELHWAPELGVFADFGNHTKAVQLKSRPPQGLVRVVGRPPPRLQYVDALGYVSLFPLLLQLLD
PSSPRLGPLLDVLADSRHLWSPFGLRSLSASSLFYKQRNTEHDPPYWRGAVWLNINYLALGALHHYGHVE
GPHKVQAAKLYHELRANVVRNVRQQYQATGFLWEQYSDQDGRGMGCRPFQGWTSLVLLIMAEEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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