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Report for CCDS5202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5202.1 Public Homo sapiens 6 PLAGL1 24 110 108 CCDS HistoryNCBI Gene:5325Re-query CCDS DB by CCDS ID:5202.1Re-query CCDS DB by GeneID:5325See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354765.6 ENSP00000346810.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354765.6Link to Ensembl Protein Viewer:ENSP00000346810.2Re-query CCDS DB by Nucleotide ID:ENST00000354765Re-query CCDS DB by Protein ID:ENSP00000346810
Original member Current member EBI ENST00000360537.6 ENSP00000353734.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360537.6Link to Ensembl Protein Viewer:ENSP00000353734.2Re-query CCDS DB by Nucleotide ID:ENST00000360537Re-query CCDS DB by Protein ID:ENSP00000353734
Original member Current member EBI ENST00000367571.3 ENSP00000356543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367571.3Link to Ensembl Protein Viewer:ENSP00000356543.1Re-query CCDS DB by Nucleotide ID:ENST00000367571Re-query CCDS DB by Protein ID:ENSP00000356543
Original member Current member EBI ENST00000416623.5 ENSP00000400060.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416623.5Link to Ensembl Protein Viewer:ENSP00000400060.1Re-query CCDS DB by Nucleotide ID:ENST00000416623Re-query CCDS DB by Protein ID:ENSP00000400060
Original member Current member EBI ENST00000444202.5 ENSP00000400929.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444202.5Link to Ensembl Protein Viewer:ENSP00000400929.1Re-query CCDS DB by Nucleotide ID:ENST00000444202Re-query CCDS DB by Protein ID:ENSP00000400929
Original member Current member EBI ENST00000625622.2 ENSP00000486355.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625622.2Link to Ensembl Protein Viewer:ENSP00000486355.1Re-query CCDS DB by Nucleotide ID:ENST00000625622Re-query CCDS DB by Protein ID:ENSP00000486355
Original member Current member EBI ENST00000649307.1 ENSP00000496979.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649307.1Link to Ensembl Protein Viewer:ENSP00000496979.1Re-query CCDS DB by Nucleotide ID:ENST00000649307Re-query CCDS DB by Protein ID:ENSP00000496979
Original member Current member EBI ENST00000650125.1 ENSP00000497363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650125.1Link to Ensembl Protein Viewer:ENSP00000497363.1Re-query CCDS DB by Nucleotide ID:ENST00000650125Re-query CCDS DB by Protein ID:ENSP00000497363
Original member Current member EBI ENST00000649211.1 ENSP00000497492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649211.1Link to Ensembl Protein Viewer:ENSP00000497492.1Re-query CCDS DB by Nucleotide ID:ENST00000649211Re-query CCDS DB by Protein ID:ENSP00000497492
Original member Current member EBI ENST00000674357.1 ENSP00000501459.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674357.1Link to Ensembl Protein Viewer:ENSP00000501459.1Re-query CCDS DB by Nucleotide ID:ENST00000674357Re-query CCDS DB by Protein ID:ENSP00000501459
Original member Current member NCBI NM_001080951.3 NP_001074420.1 Accepted alive Link to Nucleotide Sequence:NM_001080951.3Link to Protein Sequence:NP_001074420.1Re-query CCDS DB by Nucleotide ID:NM_001080951Re-query CCDS DB by Protein ID:NP_001074420Link to BLAST:NP_001074420.1
Original member Current member NCBI NM_001080952.3 NP_001074421.1 Accepted alive Link to Nucleotide Sequence:NM_001080952.3Link to Protein Sequence:NP_001074421.1Re-query CCDS DB by Nucleotide ID:NM_001080952Re-query CCDS DB by Protein ID:NP_001074421Link to BLAST:NP_001074421.1
Original member Current member NCBI NM_001080953.3 NP_001074422.1 Accepted alive Link to Nucleotide Sequence:NM_001080953.3Link to Protein Sequence:NP_001074422.1Re-query CCDS DB by Nucleotide ID:NM_001080953Re-query CCDS DB by Protein ID:NP_001074422Link to BLAST:NP_001074422.1
Original member Current member NCBI NM_001080954.3 NP_001074423.1 Accepted alive Link to Nucleotide Sequence:NM_001080954.3Link to Protein Sequence:NP_001074423.1Re-query CCDS DB by Nucleotide ID:NM_001080954Re-query CCDS DB by Protein ID:NP_001074423Link to BLAST:NP_001074423.1
Original member Current member NCBI NM_001289042.2 NP_001275971.1 Accepted alive Link to Nucleotide Sequence:NM_001289042.2Link to Protein Sequence:NP_001275971.1Re-query CCDS DB by Nucleotide ID:NM_001289042Re-query CCDS DB by Protein ID:NP_001275971Link to BLAST:NP_001275971.1
Original member Current member NCBI NM_001289043.2 NP_001275972.1 Accepted alive Link to Nucleotide Sequence:NM_001289043.2Link to Protein Sequence:NP_001275972.1Re-query CCDS DB by Nucleotide ID:NM_001289043Re-query CCDS DB by Protein ID:NP_001275972Link to BLAST:NP_001275972.1
Original member Current member NCBI NM_001289044.2 NP_001275973.1 Accepted alive Link to Nucleotide Sequence:NM_001289044.2Link to Protein Sequence:NP_001275973.1Re-query CCDS DB by Nucleotide ID:NM_001289044Re-query CCDS DB by Protein ID:NP_001275973Link to BLAST:NP_001275973.1
Original member Current member NCBI NM_001289045.2 NP_001275974.1 Accepted alive Link to Nucleotide Sequence:NM_001289045.2Link to Protein Sequence:NP_001275974.1Re-query CCDS DB by Nucleotide ID:NM_001289045Re-query CCDS DB by Protein ID:NP_001275974Link to BLAST:NP_001275974.1
Original member Current member NCBI NM_001289046.2 NP_001275975.1 Accepted alive Link to Nucleotide Sequence:NM_001289046.2Link to Protein Sequence:NP_001275975.1Re-query CCDS DB by Nucleotide ID:NM_001289046Re-query CCDS DB by Protein ID:NP_001275975Link to BLAST:NP_001275975.1
Original member Current member NCBI NM_001289047.2 NP_001275976.1 Accepted alive Link to Nucleotide Sequence:NM_001289047.2Link to Protein Sequence:NP_001275976.1Re-query CCDS DB by Nucleotide ID:NM_001289047Re-query CCDS DB by Protein ID:NP_001275976Link to BLAST:NP_001275976.1
Original member Current member NCBI NM_001289048.2 NP_001275977.1 Accepted alive Link to Nucleotide Sequence:NM_001289048.2Link to Protein Sequence:NP_001275977.1Re-query CCDS DB by Nucleotide ID:NM_001289048Re-query CCDS DB by Protein ID:NP_001275977Link to BLAST:NP_001275977.1
Original member Current member NCBI NM_001289049.2 NP_001275978.1 Accepted alive Link to Nucleotide Sequence:NM_001289049.2Link to Protein Sequence:NP_001275978.1Re-query CCDS DB by Nucleotide ID:NM_001289049Re-query CCDS DB by Protein ID:NP_001275978Link to BLAST:NP_001275978.1
Original member Current member NCBI NM_001317156.1 NP_001304085.1 Accepted alive Link to Nucleotide Sequence:NM_001317156.1Link to Protein Sequence:NP_001304085.1Re-query CCDS DB by Nucleotide ID:NM_001317156Re-query CCDS DB by Protein ID:NP_001304085Link to BLAST:NP_001304085.1
Original member Current member NCBI NM_001317157.2 NP_001304086.1 Accepted alive Link to Nucleotide Sequence:NM_001317157.2Link to Protein Sequence:NP_001304086.1Re-query CCDS DB by Nucleotide ID:NM_001317157Re-query CCDS DB by Protein ID:NP_001304086Link to BLAST:NP_001304086.1
Original member Current member NCBI NM_001317159.2 NP_001304088.1 Accepted alive Link to Nucleotide Sequence:NM_001317159.2Link to Protein Sequence:NP_001304088.1Re-query CCDS DB by Nucleotide ID:NM_001317159Re-query CCDS DB by Protein ID:NP_001304088Link to BLAST:NP_001304088.1
Original member Current member NCBI NM_001317161.2 NP_001304090.1 Accepted alive Link to Nucleotide Sequence:NM_001317161.2Link to Protein Sequence:NP_001304090.1Re-query CCDS DB by Nucleotide ID:NM_001317161Re-query CCDS DB by Protein ID:NP_001304090Link to BLAST:NP_001304090.1
Original member Current member NCBI NM_001317162.2 NP_001304091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317162.2Link to Protein Sequence:NP_001304091.1Re-query CCDS DB by Nucleotide ID:NM_001317162Re-query CCDS DB by Protein ID:NP_001304091Link to BLAST:NP_001304091.1
Original member Current member NCBI NM_006718.5 NP_006709.2 Accepted alive Link to Nucleotide Sequence:NM_006718.5Link to Protein Sequence:NP_006709.2Re-query CCDS DB by Nucleotide ID:NM_006718Re-query CCDS DB by Protein ID:NP_006709Link to BLAST:NP_006709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074420.1 463 Q9UM63-1 463 100% 0 0
NP_001074421.1 463 Q9UM63-1 463 100% 0 0
NP_001074422.1 463 Q9UM63-1 463 100% 0 0
NP_001074423.1 463 Q9UM63-1 463 100% 0 0
NP_001275971.1 463 Q9UM63-1 463 100% 0 0
NP_001275972.1 463 Q9UM63-1 463 100% 0 0
NP_001275973.1 463 Q9UM63-1 463 100% 0 0
NP_001275974.1 463 Q9UM63-1 463 100% 0 0
NP_001275975.1 463 Q9UM63-1 463 100% 0 0
NP_001275976.1 463 Q9UM63-1 463 100% 0 0
NP_001275977.1 463 Q9UM63-1 463 100% 0 0
NP_001275978.1 463 Q9UM63-1 463 100% 0 0
NP_001304085.1 463 Q9UM63-1 463 100% 0 0
NP_001304086.1 463 Q9UM63-1 463 100% 0 0
NP_001304088.1 463 Q9UM63-1 463 100% 0 0
NP_001304090.1 463 Q9UM63-1 463 100% 0 0
NP_001304091.1 463 Q9UM63-1 463 100% 0 0
NP_006709.2 463 Q9UM63-1 463 100% 0 0

Chromosomal Locations for CCDS 5202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143941424 143942663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143947985 143948136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCCACGTTCCCCTGCCAGTTATGTGGCAAGACGTTCCTCACCCTGGAGAAGTTCACGATTCACAATT
ATTCCCACTCCAGGGAGCGGCCGTACAAGTGTGTGCAGCCTGACTGTGGCAAAGCCTTTGTTTCCAGATA
TAAATTGATGAGGCATATGGCTACCCATTCTCCCCAGAAATCTCACCAGTGTGCTCACTGTGAGAAGACG
TTCAACCGGAAAGACCACCTGAAAAACCACCTCCAGACCCACGACCCCAACAAAATGGCCTTTGGGTGTG
AGGAGTGTGGGAAGAAGTACAACACCATGCTGGGCTATAAGAGGCACCTGGCCCTCCATGCGGCCAGCAG
TGGGGACCTCACCTGTGGGGTCTGTGCCCTGGAGCTAGGGAGCACCGAGGTGCTACTGGACCACCTCAAA
GCCCATGCGGAAGAGAAGCCCCCTAGCGGAACCAAGGAAAAGAAGCACCAGTGCGACCACTGTGAAAGAT
GCTTCTACACCCGGAAGGATGTGCGACGCCACCTGGTGGTCCACACAGGATGCAAGGACTTCCTGTGCCA
GTTCTGTGCCCAGAGATTTGGGCGCAAGGATCACCTCACCCGGCATACCAAGAAGACCCACTCACAGGAG
CTGATGAAAGAGAGCTTGCAGACCGGAGACCTTCTGAGCACCTTCCACACCATCTCGCCTTCATTCCAAC
TGAAGGCTGCTGCCTTGCCTCCTTTCCCTTTAGGAGCTTCTGCCCAGAACGGGCTTGCAAGTAGCTTGCC
AGCTGAGGTCCATAGCCTCACCCTCAGTCCCCCAGAACAAGCCGCCCAGCCTATGCAGCCGCTGCCAGAG
TCCCTGGCCTCCCTCCACCCCTCGGTATCCCCTGGCTCTCCTCCGCCACCCCTTCCCAATCACAAGTACA
ACACCACTTCTACCTCATACTCCCCACTTGCAAGCCTGCCCCTCAAAGCAGATACTAAAGGTTTTTGCAA
TATCAGTTTGTTTGAGGACTTGCCTCTGCAAGAGCCTCAGTCACCTCAAAAGCTCAACCCAGGTTTTGAT
CTGGCTAAGGGAAATGCTGGTAAAGTAAACCTGCCCAAGGAGCTGCCTGCAGATGCTGTGAACCTAACAA
TACCTGCCTCTCTGGACCTGTCCCCCCTGTTGGGCTTCTGGCAGCTGCCCCCTCCTGCTACCCAAAATAC
CTTTGGGAATAGCACTCTTGCCCTGGGGCCTGGGGAATCTTTGCCCCACAGGTTAAGCTGTCTGGGGCAG
CAGCAGCAAGAACCCCCACTTGCCATGGGCACTGTGAGCCTGGGCCAGCTCCCCCTGCCCCCCATCCCTC
ATGTGTTCTCAGCTGGCACTGGCTCTGCCATCCTGCCTCATTTCCATCATGCATTCAGATAA

Translation (463 aa):
MATFPCQLCGKTFLTLEKFTIHNYSHSRERPYKCVQPDCGKAFVSRYKLMRHMATHSPQKSHQCAHCEKT
FNRKDHLKNHLQTHDPNKMAFGCEECGKKYNTMLGYKRHLALHAASSGDLTCGVCALELGSTEVLLDHLK
AHAEEKPPSGTKEKKHQCDHCERCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQE
LMKESLQTGDLLSTFHTISPSFQLKAAALPPFPLGASAQNGLASSLPAEVHSLTLSPPEQAAQPMQPLPE
SLASLHPSVSPGSPPPPLPNHKYNTTSTSYSPLASLPLKADTKGFCNISLFEDLPLQEPQSPQKLNPGFD
LAKGNAGKVNLPKELPADAVNLTIPASLDLSPLLGFWQLPPPATQNTFGNSTLALGPGESLPHRLSCLGQ
QQQEPPLAMGTVSLGQLPLPPIPHVFSAGTGSAILPHFHHAFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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