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Report for CCDS18975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18975.1 Public Mus musculus 4 Park7 23 108 98 CCDS HistoryNCBI Gene:57320Re-query CCDS DB by CCDS ID:18975.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030805.13 ENSMUSP00000030805.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030805.13Link to Ensembl Protein Viewer:ENSMUSP00000030805.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030805Re-query CCDS DB by Protein ID:ENSMUSP00000030805
Original member Current member EBI ENSMUST00000105673.7 ENSMUSP00000101298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105673.7Link to Ensembl Protein Viewer:ENSMUSP00000101298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105673Re-query CCDS DB by Protein ID:ENSMUSP00000101298
Original member Current member EBI ENSMUST00000105674.7 ENSMUSP00000101299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105674.7Link to Ensembl Protein Viewer:ENSMUSP00000101299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105674Re-query CCDS DB by Protein ID:ENSMUSP00000101299
Original member Current member EBI ENSMUST00000105675.7 ENSMUSP00000101300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105675.7Link to Ensembl Protein Viewer:ENSMUSP00000101300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105675Re-query CCDS DB by Protein ID:ENSMUSP00000101300
Original member Current member NCBI NM_020569.3 NP_065594.2 Accepted alive Link to Nucleotide Sequence:NM_020569.3Link to Protein Sequence:NP_065594.2Re-query CCDS DB by Nucleotide ID:NM_020569Re-query CCDS DB by Protein ID:NP_065594Link to BLAST:NP_065594.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065594.2 189 Q99LX0 189 100% 0 0

Chromosomal Locations for CCDS 18975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150897311 150897471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150901008 150901094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150903815 150903884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150905250 150905309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150907040 150907141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150908318 150908407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCTTCCAAAAGAGCTCTGGTCATCCTGGCCAAAGGAGCAGAGGAGATGGAGACAGTGATTCCTGTGG
ATGTCATGCGGCGAGCCGGGATCAAAGTCACTGTTGCAGGCTTGGCTGGGAAGGACCCCGTGCAGTGTAG
CCGTGATGTAATGATTTGTCCAGATACCAGTCTGGAAGATGCAAAAACGCAGGGACCATACGATGTGGTG
GTTCTTCCAGGAGGAAATCTGGGTGCACAGAATTTATCTGAGTCGCCTATGGTGAAGGAGATCCTCAAGG
AGCAGGAGAGCAGGAAGGGCCTCATAGCTGCCATCTGTGCAGGTCCTACGGCTCTGTTGGCTCACGAAGT
AGGTTTTGGATGCAAGGTCACAACACACCCACTGGCTAAGGACAAAATGATGAATGGCAGTCACTACAGC
TACTCAGAGAGCCGCGTGGAGAAGGACGGCCTGATCCTCACCAGCCGCGGGCCGGGGACCAGCTTTGAGT
TTGCACTAGCCATTGTGGAGGCACTCGTGGGGAAAGACATGGCCAACCAAGTGAAGGCACCGCTTGTTCT
CAAAGACTAG

Translation (189 aa):
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVV
VLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFGCKVTTHPLAKDKMMNGSHYS
YSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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