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Report for CCDS23857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23857.1 Public Mus musculus 10 Smpdl3a 23 108 98 CCDS HistoryNCBI Gene:57319Re-query CCDS DB by CCDS ID:23857.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020022.7 ENSMUSP00000020022.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020022.7Link to Ensembl Protein Viewer:ENSMUSP00000020022.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020022Re-query CCDS DB by Protein ID:ENSMUSP00000020022
Original member Current member NCBI NM_020561.2 NP_065586.3 Accepted alive Link to Nucleotide Sequence:NM_020561.2Link to Protein Sequence:NP_065586.3Re-query CCDS DB by Nucleotide ID:NM_020561Re-query CCDS DB by Protein ID:NP_065586Link to BLAST:NP_065586.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065586.3 445 P70158 445 100% 0 0

Chromosomal Locations for CCDS 23857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 57794682 57794784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57800911 57801124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57802420 57802564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57805567 57805663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57807355 57807524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57807877 57808057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57809046 57809170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 57811213 57811515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCGTTGCTGGGCAACTTCCTTTGCTGCCTACTGGTTGCCTGGCTCTGCGGCCCGGGGCTCGGGGTGC
CCCTGGCGCCGGCGGATCGCGCCCCAGCTGTGGGGCAGTTTTGGCACGTGACTGACTTACATCTAGACCC
TACTTACCACATTACAGATGACCGTACCAAGGTGTGTGCTTCATCTAAAGGCGCAAATGCCTCCAACCCT
GGGCCTTTCGGAGATGTCCTGTGTGACTCTCCATATCAACTTATTTTGTCAGCCTTTGATTTTATTAAGA
ATTCAGGACAAGAAGCATCTTTCATGATATGGACAGGGGATAGCCCACCTCATGTGCCAGTACCTGAACT
CTCCACAGGCACCGTGATAAAGGTGATCACTAACATGACAATGACTGTCCAGAACCTGTTTCCAAACCTC
CAGGTTTTCCCTGCACTGGGCAATCATGACTACTGGCCACAGGACCAGCTGCCAATAGTCACCAGTAAGG
TCTACAGTGCTGTGGCTGACCTCTGGAAACCCTGGCTGGGTGAAGAAGCTATTAGCACTTTAAAGAAAGG
TGGTTTTTACTCACAGAAAGTTGCAAGTAATCCAGGCTTGAGGATCATTAGCCTAAACACAAACTTGTAC
TATGGCCCAAACATCATGACCCTGAACAAGACAGACCCAGCAAATCAGTTTGAATGGCTGGAAAATACAC
TCAACAGCTCTCTATGGAATAAGGAGAAGGTATACATCATAGCGCATGTTCCAGTGGGCTATCTCCCTTA
TGCAACTGACACCCCGGCGATAAGGCAGTACTATAATGAGAAACTGCTTGATATTTTCAGAAGATACAGC
TCCGTCATTGCGGGACAGTTCTATGGCCACACCCATAGAGACAGCCTTATGGTCCTTTCAGATAAAAACG
GGAATCCACTCAATTCTGTGTTTGTGGCACCTGCTGTTACACCAGTGAAAGGAGTTTTACAAAAGGAGAC
CAACAATCCCGGTGTCCGCCTATTTCAGTACAAGCCTGGTGATTACACATTGCTGGACATGGTGCAGTAT
TACTTGAACTTGACAGAAGCCAATCTAAAAGGAGAATCCAACTGGACATTGGAGTATGTCTTGACTCAGG
CCTACAGTGTTGCAGATCTGCAGCCAAAGAGTTTATATGCCTTAGTTCAGCAATTTGCCACCAAAGACAG
CAAGCAGTTCCTGAAATACTACCATTATTATTTTGTGAGTTATGACAGCAGTGCAACTTGTGACCAGCAT
TGTAAGACCTTACAGGTCTGTGCAATTATGAATCTTGATAGCATGTCCTATGATGATTGCCTTAAACAGC
ATTTATAA

Translation (445 aa):
MALLGNFLCCLLVAWLCGPGLGVPLAPADRAPAVGQFWHVTDLHLDPTYHITDDRTKVCASSKGANASNP
GPFGDVLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVPELSTGTVIKVITNMTMTVQNLFPNL
QVFPALGNHDYWPQDQLPIVTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTNLY
YGPNIMTLNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYS
SVIAGQFYGHTHRDSLMVLSDKNGNPLNSVFVAPAVTPVKGVLQKETNNPGVRLFQYKPGDYTLLDMVQY
YLNLTEANLKGESNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQFLKYYHYYFVSYDSSATCDQH
CKTLQVCAIMNLDSMSYDDCLKQHL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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