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Report for CCDS3303.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3303.3 Public Homo sapiens 3 PLAAT1 24 110 108 CCDS HistoryNCBI Gene:57110Re-query CCDS DB by CCDS ID:3303.3See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3303.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3303.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264735.4 ENSP00000264735.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264735.4Link to Ensembl Protein Viewer:ENSP00000264735.4Re-query CCDS DB by Nucleotide ID:ENST00000264735Re-query CCDS DB by Protein ID:ENSP00000264735
Original member Current member NCBI NM_001366112.1 NP_001353041.1 Accepted alive Link to Nucleotide Sequence:NM_001366112.1Link to Protein Sequence:NP_001353041.1Re-query CCDS DB by Nucleotide ID:NM_001366112Re-query CCDS DB by Protein ID:NP_001353041Link to BLAST:NP_001353041.1
Original member Current member NCBI NM_020386.5 NP_065119.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020386.5Link to Protein Sequence:NP_065119.3Re-query CCDS DB by Nucleotide ID:NM_020386Re-query CCDS DB by Protein ID:NP_065119Link to BLAST:NP_065119.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353041.1 168 Q9HDD0-1 168 100% 0 0
NP_065119.3 168 Q9HDD0-1 168 100% 0 0

Chromosomal Locations for CCDS 3303.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 193255651 193255789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193262970 193263235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193270604 193270705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCGTTTAATGATTGCTTCAGTTTGAACTACCCTGGCAACCCCTGCCCAGGGGACTTGATCGAAGTGT
TCCGTCCTGGCTATCAGCACTGGGCCCTGTACTTGGGTGATGGTTACGTTATCAACATAGCACCTGTAGA
TGGCATTCCTGCGTCCTTTACAAGCGCCAAGTCTGTATTCAGCAGTAAGGCCCTGGTGAAAATGCAGCTC
TTGAAGGATGTTGTGGGAAATGACACATACAGAATAAACAATAAATACGATGAAACGTACCCCCCTCTCC
CTGTGGAAGAAATCATAAAGCGGTCAGAGTTTGTAATTGGACAGGAGGTGGCCTATAACTTACTTGTCAA
CAACTGTGAACATTTTGTGACATTGCTTCGCTATGGAGAAGGAGTTTCAGAGCAGGCCAACCGAGCGATA
AGTACCGTTGAGTTTGTGACAGCTGCTGTTGGTGTCTTCTCATTCCTGGGCTTGTTTCCAAAAGGACAAA
GAGCAAAATACTATTAA

Translation (168 aa):
MAFNDCFSLNYPGNPCPGDLIEVFRPGYQHWALYLGDGYVINIAPVDGIPASFTSAKSVFSSKALVKMQL
LKDVVGNDTYRINNKYDETYPPLPVEEIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVSEQANRAI
STVEFVTAAVGVFSFLGLFPKGQRAKYY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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