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Report for CCDS47167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47167.1 Public Homo sapiens 4 STOX2 24 110 108 CCDS HistoryNCBI Gene:56977Re-query CCDS DB by CCDS ID:47167.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47167.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308497.9 ENSP00000311257.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308497.9Link to Ensembl Protein Viewer:ENSP00000311257.4Re-query CCDS DB by Nucleotide ID:ENST00000308497Re-query CCDS DB by Protein ID:ENSP00000311257
Original member Current member NCBI NM_020225.3 NP_064610.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020225.3Link to Protein Sequence:NP_064610.1Re-query CCDS DB by Nucleotide ID:NM_020225Re-query CCDS DB by Protein ID:NP_064610Link to BLAST:NP_064610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064610.1 926 Q9P2F5-1 926 100% 0 0

Chromosomal Locations for CCDS 47167.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 183906791 183906956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184001325 184001477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184009158 184011423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184017089 184017284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGAAGAAGACCCGGAGCACAACCTTGCGGCGAGCCTGGCCTAGCTCGGATTTCTCGGACCGGGCCTCGG
ACCGCATGAGGTCCCGCAGCGAGAAGGACTACCGCCTGCACAAGCGTTTCCCCGCGGCCTTCGCGCCCCA
GGCTTCGCGGGGCTACATGACATCAGGTGATGTATCACCCATCAGTATGTCTCCCATCAGTCAGTCTCAG
TTTATTCCACTCGGGGAGATCCTCTGCTTGGCCATCTCAGCAATGAACTCGGCAAGAAAGCCTGTCACCC
AAGAAGCACTGATGGAGCACCTGACCACGTGCTTCCCAGGTGTTCCAACGCCAAGCCAAGAAATTCTGCG
GCACACGCTGAACACGCTGGTACGGGAGAGGAAGATCTACCCAACTCCAGATGGCTACTTCATCGTGACC
CCACAGACTTATTTCATAACTCCTTCCCTCATAAGAACTAACAGTAAATGGTACCATTTGGACGAGAGGA
TACCTGACCGGTCTCAGTGCACCTCTCCGCAACCCGGGACCATCACGCCCTCTGCCTCAGGCTGTGTCAG
GGAAAGGACATTGCCCCGAAACCACTGCGACTCTTGCCACTGCTGCAGAGAAGACGTGCACAGCACGCAT
GCACCCACCCTGCAAAGGAAGTCTGCCAAGGACTGCAAAGACCCTTACTGTCCCCCTTCTCTGTGCCAGG
TGCCACCCACTGAAAAGAGCAAAAGTACTGTAAATTTTTCCTATAAGACAGAAACTCTCTCAAAACCTAA
AGATAGTGAAAAGCAGTCAAAAAAATTCGGGCTAAAGTTATTCCGGTTAAGTTTTAAAAAAGACAAGACC
AAACAGCTGGCCAATTTTTCTGCCCAGTTTCCTCCTGAAGAGTGGCCCCTGCGAGACGAGGACACGCCAG
CTACGATCCCTCGGGAAGTAGAGATGGAAATCATTAGGCGCATTAACCCAGACCTGACCGTGGAAAATGT
CATGCGGCACACCGCGCTCATGAAGAAACTGGAAGAAGAAAAGGCCCAGAGGAGTAAAGCCGGGTCCTCT
GCCCATCACAGCGGAAGGAGTAAAAAGAGTAGGACTCATCGGAAGTCCCATGGAAAGTCTCGGTCTCACA
GCAAGACACGGGTGTCTAAAGGAGACCCTTCCGACGGTTCACATCTGGATATCCCAGCTGAAAGAGAGTA
TGACTTTTGTGATCCTCTTACCAGGGTGCCCAGGGAGGGCTGCTTCATCATTGAACACAAAGGAGATAAC
TTCATCATGCACAGCAACACAAACGTGCTCGAGTCCCACTTCCCCATGACACCAGAATGGGATGTGTCTG
GTGAATTGGCTAAAAGGAGAACTGAGATGCCTTTTCCTGAACCTTCTAGGGGAAGCTCCCACTCAAAAGT
GCACCGAAGCCACAGCCATACACAGGACCGGAGGTCCAGGAATGAGAGATCCAACAAAGCCAAGGAGAGA
TCCAGGTCGATGGATAACTCCAAAGGCCCTCTGGGTGCTTCTTCTCTAGGGACGCCGGAAGACCTTGCTG
AAGGCTGCAGCCAAGACGACCAGACCCCCAGCCAATCCTACATTGACGACAGTACTTTAAGGCCTGCACA
GACCGTTAGTCTCCAAAGGGCTCACATTTCGTCCACAAGCTATAAAGAGGTGTGTATTCCAGAGATAGTC
AGTGGCAGCAAGGAACCGTCCAGCGCTTGCAGCCTTTTGGAGCCAGGAAAACCACCCGAGAGTTTGCCAT
CCTATGGCGAACTCAACTCTTGTCCAACAAAAACAGCCACAGATGACTATTTCCAGTGCAACACCTCTAG
TGAGACGGTGCTCACGGCACCATCACCTCTGGGAAAGAATAAGGAGGACCATGACACTCTGACTTTGGCA
GAAGGGGTGAAAAAGCTCTCCCCTTCTGATAGGCAGGTCCCCCACTCCTCCAGGGAGCCTGTGGGGCACA
AGGAGGAGTCACCAAAAGGGCCGGGTGGGGGCCCCGCTGCTTCGGGAGGAGTGGCTGAAGGGATCGCCAA
CGGACGCCTCGTCCAGCACCATGGTGCCGAGCCCAGCAGCTTGGACAAGAGGAAAGAGATATTTAGCAAA
GACACACTGTTCAAACCTCTTCACAGCACCTTGTCTGTAAACAGCTATCACAAGTCGAGCCTGTCCCTCC
TCAAATCTCACCCGAAGACACCTGCTGACACATTGCCAGGCCGATGTGAGAAACTGGAACCGTCCCTGGG
GACCTCGGCGGCACAAGCCATGCCTGCTTCCCAGCGTCAGCAGGAGTCAGGAGGGAACCAGGAAGCCTCT
TTTGACTATTACAACGTCTCTGATGATGACGACTCTGAGGAAGGGGCAAACAAGAACACAGAGGAGGAGA
AAAATAGAGAGGACGTAGGCACCATGCAGTGGCTCCTCGAGCGGGAGAAGGAAAGAGACTTGCAGAGGAA
ATTTGAAAAGAACCTCACCCTTCTTGCTCCAAAAGAAACCGACAGCAGCAGCAACCAGAGAGCCACCCAT
TCAGCCCGGCTCGACAGCATGGACAGCAGCAGCATCACAGTGGACAGTGGATTCAACTCCCCACGTACTC
GGGAGAGCCTGGCTTCCAACACATCAAGCATTGTTGAAAGTAACCGTCGTCAGAACCCCGCTTTGAGCCC
GGCCCATGGTGGAGCTGGTCCAGCCTTCAACTTCCGAGCGAGCGCGGAGCCCCCGACAAATGAAGCTGAG
AAGCTACAGAAACCTTCCAACTGCTTGCAAGCTTCTGTTACTAGCGTGTGA

Translation (926 aa):
MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSGDVSPISMSPISQSQ
FIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVT
PQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHSTH
APTLQRKSAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKT
KQLANFSAQFPPEEWPLRDEDTPATIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAQRSKAGSS
AHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPAEREYDFCDPLTRVPREGCFIIEHKGDN
FIMHSNTNVLESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKER
SRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSLQRAHISSTSYKEVCIPEIV
SGSKEPSSACSLLEPGKPPESLPSYGELNSCPTKTATDDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLA
EGVKKLSPSDRQVPHSSREPVGHKEESPKGPGGGPAASGGVAEGIANGRLVQHHGAEPSSLDKRKEIFSK
DTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEAS
FDYYNVSDDDDSEEGANKNTEEEKNREDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATH
SARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPALSPAHGGAGPAFNFRASAEPPTNEAE
KLQKPSNCLQASVTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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