NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8935.1 Public Homo sapiens 12 NDUFA4L2 24 110 108 CCDS HistoryNCBI Gene:56901Re-query CCDS DB by CCDS ID:8935.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393825.5 ENSP00000377411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393825.5Link to Ensembl Protein Viewer:ENSP00000377411.1Re-query CCDS DB by Nucleotide ID:ENST00000393825Re-query CCDS DB by Protein ID:ENSP00000377411
Original member Current member EBI ENST00000554503.6 ENSP00000450664.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000554503.6Link to Ensembl Protein Viewer:ENSP00000450664.1Re-query CCDS DB by Nucleotide ID:ENST00000554503Re-query CCDS DB by Protein ID:ENSP00000450664
Original member Current member NCBI NM_001394960.1 NP_001381889.1 Accepted alive Link to Nucleotide Sequence:NM_001394960.1Link to Protein Sequence:NP_001381889.1Re-query CCDS DB by Nucleotide ID:NM_001394960Re-query CCDS DB by Protein ID:NP_001381889Link to BLAST:NP_001381889.1
Original member Current member NCBI NM_001394961.1 NP_001381890.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394961.1Link to Protein Sequence:NP_001381890.1Re-query CCDS DB by Nucleotide ID:NM_001394961Re-query CCDS DB by Protein ID:NP_001381890Link to BLAST:NP_001381890.1
Original member Current member NCBI NM_020142.4 NP_064527.1 Accepted alive Link to Nucleotide Sequence:NM_020142.4Link to Protein Sequence:NP_064527.1Re-query CCDS DB by Nucleotide ID:NM_020142Re-query CCDS DB by Protein ID:NP_064527Link to BLAST:NP_064527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381889.1 87 Q9NRX3 87 100% 0 0
NP_001381890.1 87 Q9NRX3 87 100% 0 0
NP_064527.1 87 Q9NRX3 87 100% 0 0

Chromosomal Locations for CCDS 8935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57235563 57235619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57235749 57235809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57236593 57236681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57237029 57237085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGGCAGGAGCCAGTCTTGGGGCCCGCTTCTACCGGCAGATCAAAAGACATCCGGGGATCATCCCGATGA
TCGGCTTAATCTGCCTGGGCATGGGCAGCGCTGCGCTTTACTTGCTGCGACTCGCCCTTCGCAGCCCCGA
CGTCTGCTGGGACAGAAAGAACAACCCGGAGCCCTGGAACCGCCTGAGCCCCAATGACCAATACAAGTTC
CTTGCAGTTTCCACTGACTATAAGAAGCTGAAGAAGGACCGGCCAGACTTCTAA

Translation (87 aa):
MAGASLGARFYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKF
LAVSTDYKKLKKDRPDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH