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Report for CCDS6115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6115.1 Public Homo sapiens 8 TCIM 24 110 108 CCDS HistoryNCBI Gene:56892Re-query CCDS DB by CCDS ID:6115.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315792.5 ENSP00000319914.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315792.5Link to Ensembl Protein Viewer:ENSP00000319914.3Re-query CCDS DB by Nucleotide ID:ENST00000315792Re-query CCDS DB by Protein ID:ENSP00000319914
Original member Current member NCBI NM_020130.5 NP_064515.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020130.5Link to Protein Sequence:NP_064515.2Re-query CCDS DB by Nucleotide ID:NM_020130Re-query CCDS DB by Protein ID:NP_064515Link to BLAST:NP_064515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064515.2 106 Q9NR00 106 100% 0 0

Chromosomal Locations for CCDS 6115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 40153533 40153853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGAAAGCAAAGCGAAGCCACCAAGCCGTCATCATGTCCACGTCGCTACGAGTCAGCCCATCCATCCATG
GCTACCACTTCGACACAGCCTCTCGTAAGAAAGCCGTGGGCAACATCTTTGAAAACACAGACCAAGAATC
ACTAGAAAGGCTCTTCAGAAACTCTGGAGACAAGAAAGCAGAGGAGAGAGCCAAGATCATTTTTGCCATA
GATCAAGATGTGGAGGAGAAAACGCGTGCCCTGATGGCCTTGAAGAAGAGGACAAAAGACAAGCTTTTCC
AGTTTCTGAAACTGCGGAAATATTCCATCAAAGTTCACTGA

Translation (106 aa):
MKAKRSHQAVIMSTSLRVSPSIHGYHFDTASRKKAVGNIFENTDQESLERLFRNSGDKKAEERAKIIFAI
DQDVEEKTRALMALKKRTKDKLFQFLKLRKYSIKVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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