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Report for CCDS33839.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33839.2 Public Homo sapiens 3 MUC13 24 110 108 CCDS HistoryNCBI Gene:56667Re-query CCDS DB by CCDS ID:33839.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33839.1
This CCDS ID was withdrawn because the GRCh37.1 reference assembly contains a deletion and cannot encode the supported protein.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33839.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616727.4 ENSP00000485028.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616727.4Link to Ensembl Protein Viewer:ENSP00000485028.1Re-query CCDS DB by Nucleotide ID:ENST00000616727Re-query CCDS DB by Protein ID:ENSP00000485028
Original member Current member NCBI NM_033049.4 NP_149038.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033049.4Link to Protein Sequence:NP_149038.3Re-query CCDS DB by Nucleotide ID:NM_033049Re-query CCDS DB by Protein ID:NP_149038Link to BLAST:NP_149038.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149038.3 512 Q9H3R2 512 100% 0 0

Chromosomal Locations for CCDS 33839.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 124908147 124908348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124910415 124910499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124912104 124912141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124913111 124913240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124913562 124913681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124916317 124916480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124920234 124920289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124922197 124922303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124923527 124923649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124927532 124927993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 124934661 124934712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGAAAGCCATCATTCATCTTACTCTTCTTGCTCTCCTTTCTGTAAACACAGCCACCAACCAAGGCAACT
CAGCTGATGCTGTAACAACCACAGAAACTGCGACTAGTGGTCCTACAGTAGCTGCAGCTGATACCACTGA
AACTAATTTCCCTGAAACTGCTAGCACCACAGCAAATACACCTTCTTTCCCAACAGCTACTTCACCTGCT
CCCCCCATAATTAGTACACATAGTTCCTCCACAATTCCTACACCTGCTCCCCCCATAATTAGTACACATA
GTTCCTCCACAATTCCTATACCTACTGCTGCAGACAGTGAGTCAACCACAAATGTAAATTCATTAGCTAC
CTCTGACATAATCACCGCTTCATCTCCAAATGATGGATTAATCACAATGGTTCCTTCTGAAACACAAAGT
AACAATGAAATGTCCCCCACCACAGAAGACAATCAATCATCAGGGCCTCCCACTGGCACCGCTTTATTGG
AGACCAGCACCCTAAACAGCACAGGTCCCAGCAATCCTTGCCAAGATGATCCCTGTGCAGATAATTCGTT
ATGTGTTAAGCTGCATAATACAAGTTTTTGCCTGTGTTTAGAAGGGTATTACTACAACTCTTCTACATGT
AAGAAAGGAAAGGTATTCCCTGGGAAGATTTCAGTGACAGTATCAGAAACATTTGACCCAGAAGAGAAAC
ATTCCATGGCCTATCAAGACTTGCATAGTGAAATTACTAGCTTGTTTAAAGATGTATTTGGCACATCTGT
TTATGGACAGACTGTAATTCTTACTGTAAGCACATCTCTGTCACCAAGATCTGAAATGCGTGCTGATGAC
AAGTTTGTTAATGTAACAATAGTAACAATTTTGGCAGAAACCACAAGTGACAATGAGAAGACTGTGACTG
AGAAAATTAATAAAGCAATTAGAAGTAGCTCAAGCAACTTTCTAAACTATGATTTGACCCTTCGGTGTGA
TTATTATGGCTGTAACCAGACTGCGGATGACTGCCTCAATGGTTTAGCATGCGATTGCAAATCTGACCTG
CAAAGGCCTAACCCACAGAGCCCTTTCTGCGTTGCTTCCAGTCTCAAGTGTCCTGATGCCTGCAACGCAC
AGCACAAGCAATGCTTAATAAAGAAGAGTGGTGGGGCCCCTGAGTGTGCGTGCGTGCCCGGCTACCAGGA
AGATGCTAATGGGAACTGCCAAAAGTGTGCATTTGGCTACAGTGGACTCGACTGTAAGGACAAATTTCAG
CTGATCCTCACTATTGTGGGCACCATCGCTGGCATTGTCATTCTCAGCATGATAATTGCATTGATTGTCA
CAGCAAGATCAAATAACAAAACGAAGCATATTGAAGAAGAGAACTTGATTGACGAAGACTTTCAAAATCT
AAAACTGCGGTCGACAGGCTTCACCAATCTTGGAGCAGAAGGGAGCGTCTTTCCTAAGGTCAGGATAACG
GCCTCCAGAGACAGCCAGATGCAAAATCCCTATTCAAGACACAGCAGCATGCCCCGCCCTGACTATTAG

Translation (512 aa):
MKAIIHLTLLALLSVNTATNQGNSADAVTTTETATSGPTVAAADTTETNFPETASTTANTPSFPTATSPA
PPIISTHSSSTIPTPAPPIISTHSSSTIPIPTAADSESTTNVNSLATSDIITASSPNDGLITMVPSETQS
NNEMSPTTEDNQSSGPPTGTALLETSTLNSTGPSNPCQDDPCADNSLCVKLHNTSFCLCLEGYYYNSSTC
KKGKVFPGKISVTVSETFDPEEKHSMAYQDLHSEITSLFKDVFGTSVYGQTVILTVSTSLSPRSEMRADD
KFVNVTIVTILAETTSDNEKTVTEKINKAIRSSSSNFLNYDLTLRCDYYGCNQTADDCLNGLACDCKSDL
QRPNPQSPFCVASSLKCPDACNAQHKQCLIKKSGGAPECACVPGYQEDANGNCQKCAFGYSGLDCKDKFQ
LILTIVGTIAGIVILSMIIALIVTARSNNKTKHIEEENLIDEDFQNLKLRSTGFTNLGAEGSVFPKVRIT
ASRDSQMQNPYSRHSSMPRPDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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