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Report for CCDS6596.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6596.2 Public Homo sapiens 9 OR2S2 24 110 108 CCDS HistoryNCBI Gene:56656Re-query CCDS DB by CCDS ID:6596.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 6596.2
This olfactory receptor gene is a segregating pseudogene (PMID:22908908), where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele that is predicted to be non-functional. This CCDS is being retained because the Classifier for Olfactory Receptor Pseudogenes (CORP) predicts the reference genome allele to be functional.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 6596.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341959.2 ENSP00000344040.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341959.2Link to Ensembl Protein Viewer:ENSP00000344040.2Re-query CCDS DB by Nucleotide ID:ENST00000341959Re-query CCDS DB by Protein ID:ENSP00000344040
Original member Current member NCBI NM_019897.2 NP_063950.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019897.2Link to Protein Sequence:NP_063950.2Re-query CCDS DB by Nucleotide ID:NM_019897Re-query CCDS DB by Protein ID:NP_063950Link to BLAST:NP_063950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063950.2 319 Q9NQN1 319 100% 0 0

Chromosomal Locations for CCDS 6596.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35957139 35958098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGAAAAAGCCAATGAGACCTCCCCTGTGATGGGGTTCGTTCTCCTGAGGCTCTCTGCCCACCCAGAGC
TGGAAAAGACATTCTTCGTGCTCATCCTGCTGATGTACCTCGTGATCCTGCTGGGCAATGGGGTCCTCAT
CCTGGTGACCATCCTTGACTCCCGCCTGCACACGCCCATGTACTTCTTCCTAGGGAACCTCTCCTTCCTG
GACATCTGCTTCACTACCTCCTCAGTCCCACTGGTCCTGGACAGCTTTTTGACTCCCCAGGAAACCATCT
CCTTCTCAGCCTGTGCTGTGCAGATGGCACTCTCCTTTGCCATGGCAGGAACAGAGTGCTTGCTCCTGAG
CATGATGGCATTTGATCGCTATGTGGCCATCTGCAACCCCCTTAGGTACTCCGTGATCATGAGCAAGGCT
GCCTACATGCCCATGGCTGCCAGCTCCTGGGCTATTGGTGGTGCTGCTTCCGTGGTACACACATCCTTGG
CAATTCAGCTGCCCTTCTGTGGAGACAATGTCATCAACCACTTCACCTGTGAGATTCTGGCTGTTCTAAA
GTTGGCCTGTGCTGACATTTCCATCAATGTGATCAGCATGGAGGTGACGAATGTGATCTTCCTAGGAGTC
CCGGTTCTGTTCATCTCTTTCTCCTATGTCTTCATCATCACCACCATCCTGAGGATCCCCTCAGCTGAGG
GGAGGAAAAAGGTCTTCTCCACCTGCTCTGCCCACCTCACCGTGGTGATCGTCTTCTACGGGACCTTATT
CTTCATGTATGGGAAGCCTAAGTCTAAGGACTCCATGGGAGCAGACAAAGAGGATCTTTCAGACAAACTC
ATCCCCCTTTTCTATGGGGTGGTGACCCCGATGCTCAACCCCATCATCTATAGCCTGAGGAACAAGGATG
TGAAGGCTGCTGTGAGGAGACTGCTGAGACCAAAAGGCTTCACTCAGTGA

Translation (319 aa):
MEKANETSPVMGFVLLRLSAHPELEKTFFVLILLMYLVILLGNGVLILVTILDSRLHTPMYFFLGNLSFL
DICFTTSSVPLVLDSFLTPQETISFSACAVQMALSFAMAGTECLLLSMMAFDRYVAICNPLRYSVIMSKA
AYMPMAASSWAIGGAASVVHTSLAIQLPFCGDNVINHFTCEILAVLKLACADISINVISMEVTNVIFLGV
PVLFISFSYVFIITTILRIPSAEGRKKVFSTCSAHLTVVIVFYGTLFFMYGKPKSKDSMGADKEDLSDKL
IPLFYGVVTPMLNPIIYSLRNKDVKAAVRRLLRPKGFTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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