NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3780.1 Public Homo sapiens 4 ARFIP1 24 110 108 CCDS HistoryNCBI Gene:27236Re-query CCDS DB by CCDS ID:3780.1Re-query CCDS DB by GeneID:27236See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356064.3 ENSP00000348360.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356064.3Link to Ensembl Protein Viewer:ENSP00000348360.3Re-query CCDS DB by Nucleotide ID:ENST00000356064Re-query CCDS DB by Protein ID:ENSP00000348360
Original member Current member EBI ENST00000405727.6 ENSP00000384189.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405727.6Link to Ensembl Protein Viewer:ENSP00000384189.2Re-query CCDS DB by Nucleotide ID:ENST00000405727Re-query CCDS DB by Protein ID:ENSP00000384189
Original member Current member NCBI NM_001025593.3 NP_001020764.1 Accepted alive Link to Nucleotide Sequence:NM_001025593.3Link to Protein Sequence:NP_001020764.1Re-query CCDS DB by Nucleotide ID:NM_001025593Re-query CCDS DB by Protein ID:NP_001020764Link to BLAST:NP_001020764.1
Original member Current member NCBI NM_001287433.2 NP_001274362.1 Accepted alive Link to Nucleotide Sequence:NM_001287433.2Link to Protein Sequence:NP_001274362.1Re-query CCDS DB by Nucleotide ID:NM_001287433Re-query CCDS DB by Protein ID:NP_001274362Link to BLAST:NP_001274362.1
Original member Current member NCBI NM_014447.4 NP_055262.1 Accepted alive Link to Nucleotide Sequence:NM_014447.4Link to Protein Sequence:NP_055262.1Re-query CCDS DB by Nucleotide ID:NM_014447Re-query CCDS DB by Protein ID:NP_055262Link to BLAST:NP_055262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020764.1 341 P53367-2 341 100% 0 0
NP_001274362.1 341 P53367-2 341 100% 0 0
NP_055262.1 341 P53367-2 341 100% 0 0

Chromosomal Locations for CCDS 3780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152829634 152829726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152863606 152863714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152872452 152872564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152880963 152881184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152882723 152882880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152888133 152888307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152910064 152910219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGCTCAAGAATCTCCCAAAAATTCAGCAGCAGAAATTCCAGTGACTAGTAATGGAGAAGTTGATGACT
CTCGTGAACATAGCTTTAATAGGGATTTGAAGCATTCATTACCATCTGGACTTGGTCTCTCAGAAACCCA
AATTACATCTCATGGCTTTGACAATACCAAAGAGGGTGTTATTGAAGCAGGAGCATTTCAAGGTGGCCAG
AGAACACAGACAAAAAGTGGACCAGTTATTCTAGCAGATGAAATTAAAAATCCTGCAATGGAAAAGTTAG
AACTTGTTAGAAAATGGAGTCTAAACACCTATAAGTGTACTCGACAGATTATCTCTGAGAAGCTAGGCCG
TGGCTCAAGAACTGTGGACCTTGAACTTGAAGCTCAGATTGATATATTAAGGGATAACAAGAAAAAATAT
GAAAATATTTTAAAACTGGCTCAAACATTGTCGACCCAGCTTTTCCAGATGGTACATACCCAAAGGCAAC
TTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCACTAGAACTTCATGAAGAATTTGGCTATAATGCCGA
TACCCAGAAACTGCTGGCTAAAAATGGAGAGACTCTTCTTGGGGCCATTAATTTTTTCATTGCTAGTGTG
AACACTTTGGTGAATAAAACCATTGAAGATACATTAATGACTGTGAAACAGTATGAAAGTGCCAGGATTG
AATATGATGCATATCGCACTGATTTGGAAGAACTGAATCTTGGACCACGTGACGCAAACACTCTGCCAAA
GATTGAGCAGTCACAGCATCTCTTCCAAGCACATAAGGAAAAATATGATAAAATGCGCAATGATGTTTCT
GTCAAATTGAAATTTCTAGAAGAAAATAAGGTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATG
CCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACACTTAAACAGTTCCATATCAAATT
GAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAA

Translation (341 aa):
MAQESPKNSAAEIPVTSNGEVDDSREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKEGVIEAGAFQGGQ
RTQTKSGPVILADEIKNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKY
ENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASV
NTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVS
VKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH