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Report for CCDS20515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20515.1 Public Mus musculus 6 Vmn2r26 23 108 98 CCDS HistoryNCBI Gene:56552Re-query CCDS DB by CCDS ID:20515.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032238.4 ENSMUSP00000032238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032238.4Link to Ensembl Protein Viewer:ENSMUSP00000032238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000032238Re-query CCDS DB by Protein ID:ENSMUSP00000032238
Original member Current member NCBI NM_019917.2 NP_064301.2 Accepted alive Link to Nucleotide Sequence:NM_019917.2Link to Protein Sequence:NP_064301.2Re-query CCDS DB by Nucleotide ID:NM_019917Re-query CCDS DB by Protein ID:NP_064301Link to BLAST:NP_064301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064301.2 855 Q6TAC4 855 100% 0 0

Chromosomal Locations for CCDS 20515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124024758 124024975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124025851 124026148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124039095 124039904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124050629 124050853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124053859 124053982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124061143 124062035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGAAATTACTCACTGCTTTCTCTCCCCTAGTTGTTCTCATTTTATTCCAGGAACAAATTTCTTGTTACT
ACTTAACTAAATATGCTTCTTCTGGCTACTATCAAGATGCAGATTTTGTTATTGGAGGACTCTTTTCCCT
TAGAGTGACTGATGGAGATACATTTATAAGTAGATCTGGCGTTGAAGATACAAGCCATATAGCAGAATAT
GTTTTTGCGGATCTCATTAAATATTATCAGCACATTTTAGCAATGGTTTTTGCTATAGAAAAAATCAACA
AGGACCCAAATATTCTATTCAACAAGTCCCTGGGATTCTTTCTCTTCAATGTCAACTTCATTGAGATGAA
GGCTGCGGAAGGTTCTATGGCTTTGCTCTCAGGAGAGAGCCCCCCAATTCCTAACTACAGCTGCAGGCCT
GAAAAGACTGATAAGCTGGTTGCAGTGATAGGAGGCATTTCAACATCAATATCCATTCAGATCTCCCGAG
TTCTAAGTCTCTACAACGTCCCACAGATCAGCTATGCTCCTTTTGACCAGATTCTTGGGACCAGAGTCCA
GCTTCAGTCTCCTTATCAGTTTTCAATGCACACCGCAGCTCTGTATCAGGGAATTGTCCAACTGCTGTTA
TACTTCACTTGGATCTGGGTTGGCCTAGTGGTTCCAGATGATATGAGGGGAGAACTCTATCTTAGGGACA
TTACCAAGGAGATGATCAGCCATGGAATTTGTTTTGCATTTGCAGAAAAGGTTACAGAATATTCTTCTAT
GGACACAGTAAACTGGAAACATTTTATGGAACGACTTACCTTGACACCTGTTATCATTACTGTTGGAGAC
ACACATTCTCTTCTGCGAATTGTCTATTTTGTCATTTTCTATAATCTTTCAGGTAATGTCTGGATCACAA
CTTCTGATTGGTATATCACCACATTACCCTTTGAACAGAATTTAATTTATACACACTTTGGTGGAGGATT
ATCATTTTCATTTCACATGGATGAAATTCTGGGATTCAAGGATTTTCTCAGAAGTGTTCAACCTAGAAAA
TACCCTCATGATATCTTTATCCGGCATGTATGGTCAAGCTTATTTGGATGTCCACATTACTACCAACACA
GACTCTGGGATCTAAGTCAATGTGAGCCAAATGGCAGCCTGAGCACACGACCTCTGCATGCTTGGGATAT
GAATACCTCACCCTATAGCTACAAAGTCTATGCTGCTGTGTATGCCATTGCCCAGGCACTCCATGAGGAG
CTGTCACTCAGAGTGGAAGGAGACTCATCCAATAAATGTTTACTCCAGGCTCCTCTCCCATGGAAGCTCC
ATCCATTCCTACAAAAGGGCCAACTTGGGAGAAGCACCAATGAGGAGAACACTGTGAACAAGGAAGTTTC
AGCAATCAAGCTTGACATCTTTAATTACCAGTCTCTACAGAGCGGTACTGAAGCTCATGTGAAGGTTGGC
GAGTTTGTCTTTGACTCTCACAGTGTTCAGCATCTTTCACTAAATGACAAAATAATAACTTGGGGTAAAC
ACCGCAGTCAGACTCCTTTATCTGTTTGCAGTCAAAGTTGTCCATTTGGATTTAGCAAAACAGCTGTTGA
GGGGAAACCATTCTGTTGTTTTGATTGTGTCCCATGTCCAGATGGAGAAATTGCAAATAAAACAGATATG
GATCAATGTATCAAGTGTCCTGAAGATCAGTATCCAAATAAACAGAGGAATCAGTGTCTCCCTAAAATTA
TGGTATTTTTGGCCCATGAAGATCCACTGGGAACTGTTCTTGTCTCCTTGGCCATTAGTTTATCTGCCTT
TTCAGCTATGATTCTAGGATTATTTATCTGCTATCGAGAAACACCCATTGTCAGAGCAAATAACAGAAAT
CTCAGTTATCTCCTCCTCATTTCTCTAAAGCTCTGTTTCTCTTGCTCACTAATGTTCATTGGCCAACCTA
GAACAGTCACTTGTGTCTTGAGACAAATTATTTTTGGGATTGTATTTTCCATTGTCATTTCTGCTATCTT
GGCAAAGACCTTCATTGTGGTTATGGCTTTCAAAGCCATCAAACCAGGAAGCATCTTAAAAATGGGGATG
GTGACCCGACTCTCAAATGCCATAGTCTGCTGTGGTTCCATCATTCAAGTGTGCATCTGTGCAGTCTGGC
TGGGAACATATCCCCCTTTCCCTGATGTTGACATGCACTCAGAGTTTGGTCAAATCATTCTCTGGTGTAA
CGAGGGGTCCACCCTTGCTTTCTATTGTGTTCTGGGGTACTTGGGCTTTCTGGCCAGTCTCAGCTTGCTT
ATTGCTTTTCTGGCTAGAAGGCTACCTGACAGCTTCAATGAGGCAAAAACAATCACATTCAGCATGCTGG
TTTTCTGCAGTGTGTGGATTTCTTTTGTACCAGCTTACCTGAGCTCGAAAGGCAAAACCATGGTGGCCGT
GGAAATTCTTTCAATTCTAGCCTCCAGTGCTGGCTTACTGGGATGTATATTTCTTCCCAAATGCTATGTG
ATCCTACTGAAGTCAGGTGGTCATTCAAGAAAGAAGTTCTTTAAATGA

Translation (855 aa):
MKLLTAFSPLVVLILFQEQISCYYLTKYASSGYYQDADFVIGGLFSLRVTDGDTFISRSGVEDTSHIAEY
VFADLIKYYQHILAMVFAIEKINKDPNILFNKSLGFFLFNVNFIEMKAAEGSMALLSGESPPIPNYSCRP
EKTDKLVAVIGGISTSISIQISRVLSLYNVPQISYAPFDQILGTRVQLQSPYQFSMHTAALYQGIVQLLL
YFTWIWVGLVVPDDMRGELYLRDITKEMISHGICFAFAEKVTEYSSMDTVNWKHFMERLTLTPVIITVGD
THSLLRIVYFVIFYNLSGNVWITTSDWYITTLPFEQNLIYTHFGGGLSFSFHMDEILGFKDFLRSVQPRK
YPHDIFIRHVWSSLFGCPHYYQHRLWDLSQCEPNGSLSTRPLHAWDMNTSPYSYKVYAAVYAIAQALHEE
LSLRVEGDSSNKCLLQAPLPWKLHPFLQKGQLGRSTNEENTVNKEVSAIKLDIFNYQSLQSGTEAHVKVG
EFVFDSHSVQHLSLNDKIITWGKHRSQTPLSVCSQSCPFGFSKTAVEGKPFCCFDCVPCPDGEIANKTDM
DQCIKCPEDQYPNKQRNQCLPKIMVFLAHEDPLGTVLVSLAISLSAFSAMILGLFICYRETPIVRANNRN
LSYLLLISLKLCFSCSLMFIGQPRTVTCVLRQIIFGIVFSIVISAILAKTFIVVMAFKAIKPGSILKMGM
VTRLSNAIVCCGSIIQVCICAVWLGTYPPFPDVDMHSEFGQIILWCNEGSTLAFYCVLGYLGFLASLSLL
IAFLARRLPDSFNEAKTITFSMLVFCSVWISFVPAYLSSKGKTMVAVEILSILASSAGLLGCIFLPKCYV
ILLKSGGHSRKKFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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