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Report for CCDS7094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7094.1 Public Homo sapiens 10 OPTN 24 110 108 CCDS HistoryNCBI Gene:10133Re-query CCDS DB by CCDS ID:7094.1Re-query CCDS DB by GeneID:10133See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7094.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263036.9 ENSP00000263036.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263036.9Link to Ensembl Protein Viewer:ENSP00000263036.3Re-query CCDS DB by Nucleotide ID:ENST00000263036Re-query CCDS DB by Protein ID:ENSP00000263036
Original member Current member EBI ENST00000378747.8 ENSP00000368021.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378747.8Link to Ensembl Protein Viewer:ENSP00000368021.3Re-query CCDS DB by Nucleotide ID:ENST00000378747Re-query CCDS DB by Protein ID:ENSP00000368021
Original member Current member EBI ENST00000378748.7 ENSP00000368022.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378748.7Link to Ensembl Protein Viewer:ENSP00000368022.3Re-query CCDS DB by Nucleotide ID:ENST00000378748Re-query CCDS DB by Protein ID:ENSP00000368022
Original member Current member EBI ENST00000378757.6 ENSP00000368032.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378757.6Link to Ensembl Protein Viewer:ENSP00000368032.2Re-query CCDS DB by Nucleotide ID:ENST00000378757Re-query CCDS DB by Protein ID:ENSP00000368032
Original member Current member NCBI NM_001008211.1 NP_001008212.1 Accepted alive Link to Nucleotide Sequence:NM_001008211.1Link to Protein Sequence:NP_001008212.1Re-query CCDS DB by Nucleotide ID:NM_001008211Re-query CCDS DB by Protein ID:NP_001008212Link to BLAST:NP_001008212.1
Original member Current member NCBI NM_001008212.2 NP_001008213.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008212.2Link to Protein Sequence:NP_001008213.1Re-query CCDS DB by Nucleotide ID:NM_001008212Re-query CCDS DB by Protein ID:NP_001008213Link to BLAST:NP_001008213.1
Original member Current member NCBI NM_001008213.1 NP_001008214.1 Accepted alive Link to Nucleotide Sequence:NM_001008213.1Link to Protein Sequence:NP_001008214.1Re-query CCDS DB by Nucleotide ID:NM_001008213Re-query CCDS DB by Protein ID:NP_001008214Link to BLAST:NP_001008214.1
Original member Current member NCBI NM_021980.4 NP_068815.2 Accepted alive Link to Nucleotide Sequence:NM_021980.4Link to Protein Sequence:NP_068815.2Re-query CCDS DB by Nucleotide ID:NM_021980Re-query CCDS DB by Protein ID:NP_068815Link to BLAST:NP_068815.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008212.1 577 Q96CV9-1 577 100% 0 0
NP_001008213.1 577 Q96CV9-1 577 100% 0 0
NP_001008214.1 577 Q96CV9-1 577 100% 0 0
NP_068815.2 577 Q96CV9-1 577 100% 0 0

Chromosomal Locations for CCDS 7094.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13109123 13109288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13110274 13110476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13112453 13112635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13116267 13116340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13118888 13119040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13122385 13122487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13123995 13124110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13125418 13125567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13125946 13126039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13127745 13127903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13132067 13132197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13133502 13133581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13136745 13136866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGTCCCATCAACCTCTCAGCTGCCTCACTGAAAAGGAGGACAGCCCCAGTGAAAGCACAGGAAATGGAC
CCCCCCACCTGGCCCACCCAAACCTGGACACGTTTACCCCGGAGGAGCTGCTGCAGCAGATGAAAGAGCT
CCTGACCGAGAACCACCAGCTGAAAGAAGCCATGAAGCTAAATAATCAAGCCATGAAAGGGAGATTTGAG
GAGCTTTCGGCCTGGACAGAGAAACAGAAGGAAGAACGCCAGTTTTTTGAGATACAGAGCAAAGAAGCAA
AAGAGCGTCTAATGGCCTTGAGTCATGAGAATGAGAAATTGAAGGAAGAGCTTGGAAAACTAAAAGGGAA
ATCAGAAAGGTCATCTGAGGACCCCACTGATGACTCCAGGCTTCCCAGGGCCGAAGCGGAGCAGGAAAAG
GACCAGCTCAGGACCCAGGTGGTGAGGCTACAAGCAGAGAAGGCAGACCTGTTGGGCATCGTGTCTGAAC
TGCAGCTCAAGCTGAACTCCAGCGGCTCCTCAGAAGATTCCTTTGTTGAAATTAGGATGGCTGAAGGAGA
AGCAGAAGGGTCAGTAAAAGAAATCAAGCATAGTCCTGGGCCCACGAGAACAGTCTCCACTGGCACGGCA
TTGTCTAAATATAGGAGCAGATCTGCAGATGGGGCCAAGAATTACTTCGAACATGAGGAGTTAACTGTGA
GCCAGCTCCTGCTGTGCCTAAGGGAAGGGAATCAGAAGGTGGAGAGACTTGAAGTTGCACTCAAGGAGGC
CAAAGAAAGAGTTTCAGATTTTGAAAAGAAAACAAGTAATCGTTCTGAGATTGAAACCCAGACAGAGGGG
AGCACAGAGAAAGAGAATGATGAAGAGAAAGGCCCGGAGACTGTTGGAAGCGAAGTGGAAGCACTGAACC
TCCAGGTGACATCTCTGTTTAAGGAGCTTCAAGAGGCTCATACAAAACTCAGCGAAGCTGAGCTAATGAA
GAAGAGACTTCAAGAAAAGTGTCAGGCCCTTGAAAGGAAAAATTCTGCAATTCCATCAGAGTTGAATGAA
AAGCAAGAGCTTGTTTATACTAACAAAAAGTTAGAGCTACAAGTGGAAAGCATGCTATCAGAAATCAAAA
TGGAACAGGCTAAAACAGAGGATGAAAAGTCCAAATTAACTGTGCTACAGATGACACACAACAAGCTTCT
TCAAGAACATAATAATGCATTGAAAACAATTGAGGAACTAACAAGAAAAGAGTCAGAAAAAGTGGACAGG
GCAGTGCTGAAGGAACTGAGTGAAAAACTGGAACTGGCAGAGAAGGCTCTGGCTTCCAAACAGCTGCAAA
TGGATGAAATGAAGCAAACCATTGCCAAGCAGGAAGAGGACCTGGAAACCATGACCATCCTCAGGGCTCA
GATGGAAGTTTACTGTTCTGATTTTCATGCTGAAAGAGCAGCGAGAGAGAAAATTCATGAGGAAAAGGAG
CAACTGGCATTGCAGCTGGCAGTTCTGCTGAAAGAGAATGATGCTTTCGAAGACGGAGGCAGGCAGTCCT
TGATGGAGATGCAGAGTCGTCATGGGGCGAGAACAAGTGACTCTGACCAGCAGGCTTACCTTGTTCAAAG
AGGAGCTGAGGACAGGGACTGGCGGCAACAGCGGAATATTCCGATTCATTCCTGCCCCAAGTGTGGAGAG
GTTCTGCCTGACATAGACACGTTACAGATTCACGTGATGGATTGCATCATTTAA

Translation (577 aa):
MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKLNNQAMKGRFE
ELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSERSSEDPTDDSRLPRAEAEQEK
DQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVEIRMAEGEAEGSVKEIKHSPGPTRTVSTGTA
LSKYRSRSADGAKNYFEHEELTVSQLLLCLREGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEG
STEKENDEEKGPETVGSEVEALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNE
KQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR
AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERAAREKIHEEKE
QLALQLAVLLKENDAFEDGGRQSLMEMQSRHGARTSDSDQQAYLVQRGAEDRDWRQQRNIPIHSCPKCGE
VLPDIDTLQIHVMDCII


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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