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Report for CCDS52839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52839.1 Public Mus musculus 9 Snx1 23 108 98 CCDS HistoryNCBI Gene:56440Re-query CCDS DB by CCDS ID:52839.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034946.14 ENSMUSP00000034946.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034946.14Link to Ensembl Protein Viewer:ENSMUSP00000034946.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034946Re-query CCDS DB by Protein ID:ENSMUSP00000034946
Original member Current member NCBI NM_019727.2 NP_062701.2 Accepted alive Link to Nucleotide Sequence:NM_019727.2Link to Protein Sequence:NP_062701.2Re-query CCDS DB by Nucleotide ID:NM_019727Re-query CCDS DB by Protein ID:NP_062701Link to BLAST:NP_062701.2

Chromosomal Locations for CCDS 52839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66088519 66088569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66089118 66089189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66089528 66089608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66090587 66090730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66093159 66093364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66094359 66094452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66094622 66094735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66096558 66096633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66097399 66097477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66098331 66098472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66101341 66101384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66104873 66104936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66105521 66105648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66109517 66109628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66124607 66124765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCGTCAGGAGGTGGTGGCTGTAGCGCTTCGGAGCGACTCCCTCCGCCCTTCCCTGGCATGGATCCGG
AGTCGGAAGGGGCTGCCGGGGGGTCAGAACCCGAGGCTGGGGACAGCGACACCGAGGGGGAGGATATTTT
CACTGGCGCCGCGGCAGCCACTAAGCCCCAGTCTCCAAAGAAAACCACATCCCTTTTTCCTATCAAAAAT
GGTTCCAAAGAGAATGGGATCCATGAGGACCAAGACCAAGAGCCACAGGATCTCTTTGCAGATGCCACAG
TGGAACTATCCCTGGACAGCACACAGAATAACCAGAAGACAATGCCAGGCAAAACCCTTACTTCTCATCC
TCCGCAAGAAGCCACAAATTCTCCGAAGCCACAGCCAAGCTATGAGGAGCTGGAGGAAGAACAGGAGGAT
CAGTTTGATTTGACAGTTGGTATCACCGATCCTGAGAAGATCGGGGATGGTATGAATGCCTATGTAGCCT
ACAAAGTCACCACACAGACAAGCTTACCGATGTTCAGAAGTAGGCAGTTTGCAGTGAAAAGAAGATTCAG
TGACTTCCTGGGTCTTTATGAGAAGCTTTCAGAGAAGCACTCCCAGAATGGTTTCATTGTGCCTCCTCCA
CCCGAGAAGAGCCTAATAGGAATGACAAAGGTGAAGGTTGGGAAGGAAGATTCTTCTTCCGCAGAGTTTC
TTGAGAAACGGAGGGCTGCTTTGGAAAGGTACCTTCAAAGAATTGTGAATCATCCCACCATGTTACAGGA
CCCAGATGTCAGGGAGTTTCTGGAAAAAGAAGAGCTGCCTCGAGCTGTGGGCACGCAGGCTTTGAGTGGC
GCTGGTCTCCTTAAGATGTTCAACAAAGCTACAGATGCAGTCAGCAAAATGACCATCAAGATGAATGAAT
CAGACATTTGGTTCGAGGAGAAACTCCAGGAGGTAGAGTGTGAGGAGCAGCGCCTACGGAAGCTGCATGC
TGTGGTGGAGACTCTAGTCAACCATAGGAAAGAACTAGCGCTGAACACAGCCCTGTTTGCCAAGAGTCTA
GCCATGCTTGGGAGCTCCGAGGACAACACAGCACTTTCTCGAGCGCTCTCCCAACTGGCTGAGGTGGAAG
AAAAGATTGAGCAGCTCCACCAGGAACAGGCCAACAATGACTTCTTCCTCCTTGCTGAACTCCTGAGTGA
CTATATTCGCCTCCTGGCCATTGTCCGAGCTGCCTTCGACCAGCGCATGAAGACATGGCAGCGCTGGCAG
GATGCTCAAGCCACGCTGCAGAAGAAGCGGGAGTCTGAGGCACGGCTGCTGTGGGCCAACAAGCCTGACA
AACTGCAGCAGGCTAAGGATGAGATCACAGAGTGGGAATCTCGGGTGACTCAGTATGAAAGGGACTTTGA
AAGGATTTCCACAGTTGTCCGAAAGGAAGTGACACGATTTGAGAAAGAGAAGTCCAAGGATTTCAAAAAC
CACGTGATGAAGTACCTGGAGACACTCCTACATTCCCAGCAGCAGCTGGCAAAATACTGGGAAGCCTTCC
TTCCTGAGGCAAAGGCCATCTCCTGA

Translation (521 aa):
MASGGGGCSASERLPPPFPGMDPESEGAAGGSEPEAGDSDTEGEDIFTGAAAATKPQSPKKTTSLFPIKN
GSKENGIHEDQDQEPQDLFADATVELSLDSTQNNQKTMPGKTLTSHPPQEATNSPKPQPSYEELEEEQED
QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPP
PEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQALSG
AGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSL
AMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQ
DAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKN
HVMKYLETLLHSQQQLAKYWEAFLPEAKAIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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