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Report for CCDS38295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38295.1 Public Mus musculus 2 Ncoa6 23 108 98 CCDS HistoryNCBI Gene:56406Re-query CCDS DB by CCDS ID:38295.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043126.11 ENSMUSP00000045386.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043126.11Link to Ensembl Protein Viewer:ENSMUSP00000045386.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043126Re-query CCDS DB by Protein ID:ENSMUSP00000045386
Original member Current member EBI ENSMUST00000109670.7 ENSMUSP00000105295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109670.7Link to Ensembl Protein Viewer:ENSMUSP00000105295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109670Re-query CCDS DB by Protein ID:ENSMUSP00000105295
Original member NCBI NM_019825.3 NP_062799.2 Updated not alive Link to Nucleotide Sequence:NM_019825.3Link to Protein Sequence:NP_062799.2Re-query CCDS DB by Nucleotide ID:NM_019825Re-query CCDS DB by Protein ID:NP_062799
Current member NCBI NM_019825.4 NP_062799.2 Accepted alive Link to Nucleotide Sequence:NM_019825.4Link to Protein Sequence:NP_062799.2Re-query CCDS DB by Nucleotide ID:NM_019825Re-query CCDS DB by Protein ID:NP_062799Link to BLAST:NP_062799.2

Chromosomal Locations for CCDS 38295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155391177 155391220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155395720 155395871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155399655 155399691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155402672 155402740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155405475 155408450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155411525 155411646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155414812 155415928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155418878 155419024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155420967 155421869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155422811 155422939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155432816 155432938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155433933 155434088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155437860 155438094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6210 nt):
ATGGTTTTGGATGACCTTCCAAACTTTGAAGACATCTATACTTCCTTGTGTTCATCTACAATGGGCGACT
CAGAGGTGGAGTTTGACTCTGGACTAGAAGATGATGACACGAAAAGTGATAGTATTTTGGAGGATTCCAC
AATTTTTGTAGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAACTGGATGCAATATTAAAG
AATGTGCCCAACTTGTTACACATGGAATCCAGCAAGCTAAAGGTACAGAAGGTGGAGCCCTGGAACAGCG
TGCGAGTCACATTCAACATCCCCCGGGAAGCAGCAGAACGGCTACGGATCCTGGCTCAGAGCAACAACCA
GCAGCTTCGGGACCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATCAACCTGGCTTTGGGT
CAGAACCGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAATTCCGTTAGGATGGAGGCAG
GATTTCCCATGGCAAGTGGTCCAGGTCTAATAAGGATGACGAGCCCTGCCGCTGTTATGACGCCCCAGGG
CGGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCT
GCTTCTCAGTCAGATGCAATGGATCCACTTCTCTCTGGACTCCATATACAGCAACAGAGTCATCCCTCAG
GATCTTTACCTCCAGCGCATCACTCAATGCAGCCTGTTCCTGTGAACAGACAAATGAACCCAGCTAATTT
TCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAA
CAGCAACAGCAGCAGCAACAACAGCAGCAGCAACAGTTGCAGACAAGACCTCTACAGCAACATCAGCAAC
AGCCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCT
GCCTTCTGGAGCCTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGG
AAGAAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCTTCCTTAGCTACGGTACAGA
CACCTTCTCACCCTCCCCCTCCTTATCCTTTTGGCAGCCAACAAGCCTCACAAGCCCATACAAACTTTCC
TCAAATGAGCAACCCAGGCCAGTTCACAGCTCCTCAGATGAAGGGCTTGCAGGGAGGGCCCTCCAGGGTC
CCAACCCCCCTGCAACAGCCCCACCTCACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTTCAGCAGG
GATCTCCTGCATCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAA
CCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAAT
GTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCC
TAGGAGGAATGCCTAAACGCCTCCCGCCTGGCTTCTCAGCAGGACAGGCCAATCCCAACTTCATGCAAGG
TCAGGTGCCTTCCACCACAGCAGCCACCCCTGGGAATTCAGGAGCCCTTCAGCTGCAAGCAAATCAAAAT
GTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCTCACGGGCCACCAA
ATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTGGTAGCTCTGGGGT
TCCTCAGGTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGCATG
CACCAACAGATTGTGCCCTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAACCCTCAAAATCCTA
TGATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCAGATGATGGTGAACGCTCAAAACCAAAATCTTGG
ACCTTCACCCCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCACCA
CATAACCAGATGATGGGGCCTCAGGGGCAAGTTTTGCTCCAGCAGAACCCAATGATAGAGCAAATAATGA
CCAATCAGATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGC
ACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGA
CAGATGCTGCCTCAGCAAGGACCTGTGAACAACAGTCCATCTCAGGTTATGGGGATTCAGGGGCAGGTTC
TGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGA
TGTCAACCTGTCTCAGATGATGCCTGATGTCAGCATGCAGCAAGCCAGCATGGTCCCCCCACATGTGCAG
AGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTG
GTGGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAAAATCCAGGCTTTCCCGTCAATAAAGATGTAAC
GTTAACGAGCCCATTGTTGGTCAACTTACTACAGAGTGACATTTCTGCAGGCCATTTTGGTGTAAACAAT
AAACAAAATAATACCAATGCAAATAAACCGAAGAAGAAGAAACCGCCTCGGAAGAAGAAAAATTGTCACC
AAGATCTAAACACCCCAGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGA
ACAAGGAATCAACTTGGACACCACAGGCCCCAAACTGCCAGACTTTTCAAACCGGCCACCAGGTTATCCT
ACACAACCAGTTGAACAGAGGCCACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGTCGCACCCCCAC
CACAGCCACCACAGCAGCAGCCACAACCACAACTGCCTCAGCAGCAGCAGCCACCACCACCTAGTCAGCC
ACAGTCCCAGCAGCAGCAGCAGCAACAACAAATGATGATGATGCTCATGATGCAGCAAGATCCTAAATCC
ATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGC
CCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTGCCACCATCACC
TGATAAACAGAGAATGCCGATGTCTGTGAATACTCCTATGGGAAGTAATTCAAGGAAAATGGTATACCAG
GAGAACCCACAGAATTCTTCTAGCTCACCGCTAGGAGAGATGTCCTCACTTCCTGAAGCTAGTGGCAGTG
AAGTACCATCTGTTGCAGGAGGCCCAAATAACATGCCCTCACATTTAGTAGTTTCTCAGAATCAATTAAT
GATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTCCT
GTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAGGC
CTAAAACACCAAACAGAGCCAGCCCCAGACCCTATTATCCTCAGACACCCAACAACCGCCCTCCCAGCAC
AGAACCTTCAGAAATCAGTCTATCTCCAGAGAGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCACAG
ATTAATATTCCTTTACCTCCCAGGCCAAATTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCAACAA
CTCTGAAGGCCATTGGGCAAGCACCTTCAAATCTTACTATAACTAATCCTCCTAACTTTGCTGCCCCACA
AGCTCATAAATTAGATTCTGTGGTGGTGAATTCTGGAAAACAGTCTAATCCTGGAACAACAAAACGGGCA
AGTCCAAGCAACAGTCGCAGGTCGAGTCCTGGGTCCAGTAGGAAAACTACCCCAAGTCCTGGAAGGCAAA
ACTCAAAAGCTCCTAAACTTACTCTGGCTTCTCAAACAAGCACAACCATGTTGCAGAACATGGAGCTGCC
TAGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGGAAGCTTTCCTAACAATACT
GGGCTTAATCCTCAGAATCCCACGGTGCCTGTGCCTGCAATGGGGACTGTCCTTGAGGATAACAAGGAGA
GTGTGAATATTCCTCAGGACAGTGACTGCCAGAATGCCCAGGGTAGGAAGGAGCAGGTAAACACTGAGCT
GAAAGTAGTCCCTACCCAAGAAGCTAAAATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAACCA
TTGGATCCTAACAAACTCCCCAGTGTTGAAGAGAACAAAAATTTGATGTCTCCTGCCATGAGAGAAGCAC
CAACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGGGCTTAC
AGATCTGGAAGTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACACTG
CAGGATCCGCCTTCTAAAGAACCCTCTACTTCTTTAAGCTCACCTCACAGTAGTGAGCCGTGCTCAACAC
TTGCGCGTTCAGAATTGAGTGAGGTCAGCTCTAACACTGCACCAAGCATCCCTCCAGTAATGTCAAGACC
CGTCAGCTCTTCCTCCATTTCTACTCCCTTACCTCCAAACCAAATAACTGTATTTGTTACTTCCAACCCC
ATCACCACTTCATCTAACACATCAGCAGCCCTGCCAACTCACTTGCAGTCTGCATTGATGTCAACAGTCG
TCACAATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGAAGGACAGTCAGCTGCTCAGTCTAATGCCCG
GCCTCAGTTCATTACACCTGTCTTTATCAACTCATCTTCAATAATTCAGGTTATGAAAGGATCACAGCCA
AGCACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGAC
CTTTACACATACCTCAGAACATAAAATTTTCTTCAGCTCCTGTAACACCTAATGTCCCCTCCAGTAGTCC
TGCTCCAAATATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCC
CCTCCTTGTACATCCTCTCCAGTTGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCCAG
ATGAGGCTAGTCCTCAGACGAACACCTCAGCAGACCAGAGCACTCTGCCTCCTTCACAGCCAACCACAGT
AGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAGTAAG
GGCAAAGGAAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAGTTACAGGCTCTC
TGGAGAAAGGGGAAGAACAATATGGTGCAGATGGAGAGACTGAAGGCCCAGGGCTAGAGATCACAACTCC
TGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAGCACCCACT
CTACTAAAAATGACCTCTAGCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTG
CTCTTCCCACCAGTGTACGCTCAATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAAC
CACAAAAGGCAATCATGGTGGCGTAACATCTGAGCCACTTGCAGGTGGCCTAGTGGAGGAGAAGGTGGGA
TCCCATCCAGAGCTTCTACCCAGCATAGCCCCTTCACAGAATTTAGCCCCAAAGGAAACTCCAGCCACAG
CACTGCAAGGGTCTGTTGCTAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCTGTGA
GCCAAAAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCCGAAGAAACTCTCGAACTGAGGAGCCAACT
ATGGCTTCTGAGAGCGTGGAAAATGGACATCGAAAAAGATCCTCTCGACCTGCTTCGGCCTCCAGCTCTA
CTAAAGATATAACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCAAGTAA

Translation (2069 aa):
MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWKLDAILK
NVPNLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALG
QNRSQDVRMNGPVASGNSVRMEAGFPMASGPGLIRMTSPAAVMTPQGGNMSSSMMAPGPNPELQPRTPRP
ASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHSMQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQLQTRPLQQHQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTTNQGW
KKAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNPGQFTAPQMKGLQGGPSRV
PTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGN
VPPNFMVMQQQPPNQGPQSLHPGLGGMPKRLPPGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQN
VQHAGGQGAGPPQNQMQVSHGPPNMMQPSLMGIHGNINNQQAGSSGVPQVTLGNMQGQPQQGPPSQLMGM
HQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAP
HNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSG
QMLPQQGPVNNSPSQVMGIQGQVLRPPGPSPHMAQQHNDPVTTANNDVNLSQMMPDVSMQQASMVPPHVQ
SMQGNSASGSHFSGHGVSFNAPFGGAPNGSQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHFGVNN
KQNNTNANKPKKKKPPRKKKNCHQDLNTPDNRPTGLEEVDQQSLPGEQGINLDTTGPKLPDFSNRPPGYP
TQPVEQRPLPQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQMMMMLMMQQDPKS
IRLPVSQNVHPPRGPLNPDSQRMPVQQSGNVPVMVGLQGPASVPPSPDKQRMPMSVNTPMGSNSRKMVYQ
ENPQNSSSSPLGEMSSLPEASGSEVPSVAGGPNNMPSHLVVSQNQLMMTGPKPGPSPLSATQGATPQQPP
VNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQ
INIPLPPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTITNPPNFAAPQAHKLDSVVVNSGKQSNPGTTKRA
SPSNSRRSSPGSSRKTTPSPGRQNSKAPKLTLASQTSTTMLQNMELPRNVLVGPTPLANPPLPGSFPNNT
GLNPQNPTVPVPAMGTVLEDNKESVNIPQDSDCQNAQGRKEQVNTELKVVPTQEAKMAVPEDQSKKDGQP
LDPNKLPSVEENKNLMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPVVSGEDLRKASVIPTL
QDPPSKEPSTSLSSPHSSEPCSTLARSELSEVSSNTAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNP
ITTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQP
STIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLVLSSRATPVQLPS
PPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPPSQPTTVVSPLLTNSPGSSANRRSPVSSSK
GKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLEITTPGLMGTEQCSTELDSKTPTPSAPT
LLKMTSSPMGPSSTSTGPILPGGALPTSVRSIVTTLVPSELISTAPTTKGNHGGVTSEPLAGGLVEEKVG
SHPELLPSIAPSQNLAPKETPATALQGSVARPELEANAAIASGQSCEPKEIVEKSKTLTSRRNSRTEEPT
MASESVENGHRKRSSRPASASSSTKDITGAVQSKRRKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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