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Report for CCDS37059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37059.1 Public Mus musculus 15 Stk3 23 108 98 CCDS HistoryNCBI Gene:56274Re-query CCDS DB by CCDS ID:37059.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018476.13 ENSMUSP00000018476.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018476.13Link to Ensembl Protein Viewer:ENSMUSP00000018476.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018476Re-query CCDS DB by Protein ID:ENSMUSP00000018476
Original member Current member NCBI NM_019635.2 NP_062609.2 Accepted alive Link to Nucleotide Sequence:NM_019635.2Link to Protein Sequence:NP_062609.2Re-query CCDS DB by Nucleotide ID:NM_019635Re-query CCDS DB by Protein ID:NP_062609Link to BLAST:NP_062609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062609.2 497 Q9JI10-1 497 100% 0 0

Chromosomal Locations for CCDS 37059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 34876662 34876820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34945006 34945181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34958866 34959076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 34999831 34999956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35008161 35008298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35072430 35072597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35073057 35073221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35099434 35099548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35114529 35114657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35115565 35115645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 35155527 35155552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGAGCAGCCGCCGGCGTCCAAGAGTAAGCTAAAAAAGCTGAGTGAAGACAGTTTGACTAAGCAGCCTG
AAGAAGTTTTTGATGTACTGGAGAAGCTTGGAGAAGGGTCTTATGGAAGTGTTTTTAAAGCAATACATAA
GGAATCTGGTCAAGTGGTTGCAATTAAGCAAGTACCTGTTGAGTCAGATCTTCAGGAAATAATCAAAGAA
ATTTCCATAATGCAACAATGTGACAGTCCATATGTTGTGAAGTACTATGGCAGTTACTTTAAGAACACAG
ACCTCTGGATTGTTATGGAGTACTGTGGAGCGGGGTCCGTTTCAGACATAATTAGATTGCGAAACAAGAC
ATTAACAGAAGATGAAATTGCAACTATTCTAAAATCCACATTGAAAGGATTAGAATATTTGCATTTTATG
AGGAAAATACACAGAGATATAAAAGCCGGGAATATTCTCCTCAATACAGAAGGACATGCAAAGCTTGCAG
ATTTTGGAGTGGCTGGCCAGTTAACAGATACAATGGCAAAACGCAACACTGTAATAGGAACCCCATTTTG
GATGGCTCCTGAGGTAATTCAAGAAATAGGTTACAACTGTGTGGCTGACATCTGGTCCCTTGGCATTACT
TCTATAGAAATGGCAGAAGGAAAACCTCCTTATGCTGATATACATCCGATGAGGGCTATTTTTATGATCC
CTACAAACCCACCACCAACATTCAGGAAACCTGAACTTTGGTCTGATGACTTCACCGATTTTGTGAAGAA
GTGCTTGGTGAAGAGTCCTGAGCAGAGAGCCACTGCGACACAGCTGTTACAGCATCCTTTTATCAAGAAT
GCAAAACCCGTGTCGATATTAAGAGACCTGATCGCAGAAGCCATGGAAATCAAAGCCAAACGGCATGAAG
AGCAGCAGCGGGAGCTAGAGGAGGAGGAAGAAAACTCGGATGAAGATGAGCTGGATTCACACACTATGGT
GAAGACGAGTTCAGAAAGCGTGGGCACAATGCGGGCCACCAGCACGATGAGTGAAGGAGCCCAGACGATG
ATTGAACATAACAGCACCATGTTAGAGTCGGACCTGGGGACCATGGTTATAAACAGTGAAGAAGAGGAGG
AAGAGGAAGAGGAGGAGGAGGAGGACGGAACTATGAAAAGAAATGCAACGTCACCTCAAGTACAAAGACC
TTCTTTCATGGACTACTTTGATAAGCAGGACTTCAAGAACAAGAGTCATGAAAATTGTGATCAGAGCATG
CGTGAGCCAGGCCCTATGTCCAACAGTGTTTTTCCTGACAACTGGAGAGTTCCTCAAGATGGAGACTTTG
ATTTCTTAAAAAATCTAAGTTTAGAAGAACTACAGATGCGGCTAAAAGCACTAGACCCCATGATGGAACG
AGAAATAGAAGAACTGCATCAAAGATACAGTGCAAAAAGACAACCTATCCTGGATGCCATGGATGCGAAG
AAGAGGAGGCAGCAGAATTTCTGA

Translation (497 aa):
MEQPPASKSKLKKLSEDSLTKQPEEVFDVLEKLGEGSYGSVFKAIHKESGQVVAIKQVPVESDLQEIIKE
ISIMQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILKSTLKGLEYLHFM
RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGIT
SIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQRATATQLLQHPFIKN
AKPVSILRDLIAEAMEIKAKRHEEQQRELEEEEENSDEDELDSHTMVKTSSESVGTMRATSTMSEGAQTM
IEHNSTMLESDLGTMVINSEEEEEEEEEEEEDGTMKRNATSPQVQRPSFMDYFDKQDFKNKSHENCDQSM
REPGPMSNSVFPDNWRVPQDGDFDFLKNLSLEELQMRLKALDPMMEREIEELHQRYSAKRQPILDAMDAK
KRRQQNF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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