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Report for CCDS85357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85357.1 Public Mus musculus 7 Nup98 23 108 98 CCDS HistoryNCBI Gene:269966Re-query CCDS DB by CCDS ID:85357.1Re-query CCDS DB by GeneID:269966See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211005.1 ENSMUSP00000147445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211005.1Link to Ensembl Protein Viewer:ENSMUSP00000147445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211005Re-query CCDS DB by Protein ID:ENSMUSP00000147445
Original member NCBI NM_001287167.1 NP_001274096.1 Updated not alive Link to Nucleotide Sequence:NM_001287167.1Link to Protein Sequence:NP_001274096.1Re-query CCDS DB by Nucleotide ID:NM_001287167Re-query CCDS DB by Protein ID:NP_001274096
Current member NCBI NM_001287167.2 NP_001274096.1 Accepted alive Link to Nucleotide Sequence:NM_001287167.2Link to Protein Sequence:NP_001274096.1Re-query CCDS DB by Nucleotide ID:NM_001287167Re-query CCDS DB by Protein ID:NP_001274096Link to BLAST:NP_001274096.1

Chromosomal Locations for CCDS 85357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102145395 102145721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102147200 102147377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102152318 102152456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102153136 102153249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102153795 102154093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102157052 102157168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102160541 102160728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102163689 102163822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102169363 102169503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102176313 102176405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102180377 102180515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102183463 102183600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102184806 102184969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102185861 102186041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102186632 102186739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102191903 102192042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102194661 102194837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102194949 102195050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102195785 102195860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2955 nt):
ATGTTTAACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACATTTG
GGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTTGGTTCTAGCAACAA
TACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTATTTGGTACCAGTTCATTTAGCCAG
CCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGCACATCAACAGGAACATCAAATAGCTTATTTGGAA
CTGCAAGTACCGGGACCAGTCTTTTCTCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTT
TGGGAATTTTGGAACCAGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTT
GGTAGCACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATCAAAT
TTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATCAGTACAAAGCATCA
GTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAACTACGTTTGGAGGATTATCAGGCT
AACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGCACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAA
CTTCCAGTGCAACAGGGCTCTTCAGCTCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAAC
TGCCTTTGGAACTAGCACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAG
ACTACCAGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTTGGTA
ATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACCCAAGCCTCACAACC
AGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCATTTGGGACAGGAACAGGTCTCTTT
GGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCGACCCTGTTTGGCAATAACAAGCTTACAACTTTTG
GAACCAGCACAACCAGTGCTCCTTCATTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCT
GACTTTAGGAACCAATACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTT
GGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTCTTGGTGCTG
GACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCTCTTGGTACAGGAGCCTTTGGGGC
CCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTTGGCGCCCCCCAGGCCCCAGTAGCTTTGACAGAT
CCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAATAGCCTAACATACTCACCCTTTG
GAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAA
TCCAGCTGCTCAGAAAGCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTC
AGGCCAAAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAAC
CATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAACAA
TAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAGTATCCAGAAAAT
GGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAGCAGGATGGAGAAGATGACTCTC
TTGTATCACGATTTTACACTAATCCTATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAA
AAATAACAGTAGCAGCAATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGA
TTGGAAGGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAA
ATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCTAT
GGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACCATTGGTCGTAAA
GGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTAAATTTGGATGATATTGTGCATA
TCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAG
GAAGGCTGAAGTTACTTTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCA
GATCGACTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCA
AGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAGGA
TTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACTGCCCCTTTGCCC
CCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCTGCACCCCCACCTCAGGTAGAGA
AGGGCAGAGAATGTGAATGCAGCTGTGGTAAAGAAGTCAGCTGTGCAACCCTGGCTGCTATTTTTTACTC
AAGATTTAAAGGGTTTTCTTGCTGTTTGGATCATTCTACAGATTGTAACTTTCAATTTCTCTCATTTGGA
CTTGTAATGTTTTGA

Translation (984 aa):
MFNKSFGTPFGGSTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQ
PATSTSTGFGFGTSTGTSNSLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPF
GSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQA
NRKGPQNQVGGGTTAGLFGSSPATSSATGLFSSSTTNSAFSYGQNKTAFGTSTTGFGTNPGGLFGQQNQQ
TTSLFSKPFGQATTTPNTGFSFGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLF
GQPNTGFGAVGSTLFGNNKLTTFGTSTTSAPSFGTTSGGLFGNKPTLTLGTNTNTSNFGFGTNNSGSSIF
GSKPAAGTLGTGLGTGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTSTAILGFGAPQAPVALTD
PNASAAQQAVLQQHLNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRV
RPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKLVLKNLNNSNLFSPVNHDSEDLASPSEYPEN
GERFSFLSKPVDENNQQDGEDDSLVSRFYTNPIAKPIPQTPESVGNKNNSSSNVEDTIVALNMRAALRNG
LEGSSEETSFHDESLQDDREEIENNAYHIHPAGIVLTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRK
GYGSIYFEGDVNLTNLNLDDIVHIRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSP
DRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPPKTTSKKLKTAPLP
PAGQATTFQMTLNGKPAPPPQVEKGRECECSCGKEVSCATLAAIFYSRFKGFSCCLDHSTDCNFQFLSFG
LVMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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