NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4245.1 Public Homo sapiens 5 PCDHB3 24 110 108 CCDS HistoryNCBI Gene:56132Re-query CCDS DB by CCDS ID:4245.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231130.3 ENSP00000231130.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231130.3Link to Ensembl Protein Viewer:ENSP00000231130.2Re-query CCDS DB by Nucleotide ID:ENST00000231130Re-query CCDS DB by Protein ID:ENSP00000231130
Original member Current member NCBI NM_018937.5 NP_061760.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018937.5Link to Protein Sequence:NP_061760.2Re-query CCDS DB by Nucleotide ID:NM_018937Re-query CCDS DB by Protein ID:NP_061760Link to BLAST:NP_061760.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061760.2 796 Q9Y5E6 796 100% 0 0

Chromosomal Locations for CCDS 4245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141100650 141103040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGAGGCGGGAGGAGAGCGATTTCTTAGACAAAGGCAAGTCTTGCTTCTCTTTGTTTTTCTGGGAGGGT
CTCTGGCTGGGTCCGAGTCAAGACGCTATTCTGTGGCTGAGGAAAAAGAGAAGGGCTTTTTAATAGCCAA
CCTAGCAAAGGATCTGGGACTAAGGGTAGAGGAACTGGCCGCGAGGGGGGCCCAAGTTGTGTCCAAAGGG
AACAAACAGCATTTTCAGCTCAGTCATCAGACAGGTGATTTGCTCCTGAATGAGAAATTGGACCGGGAGG
AGCTATGCGGCCCCACAGAACCATGCATACTACATTTTCAGATATTACTGCAAAACCCTTTGCAATTCGT
TACAAACGAGCTCCGTATCATAGATGTAAATGACCATTCTCCGGTATTCTTTGAAAATGAAATGCATCTG
AAAATCCTAGAAAGCACTCTGCCAGGAACAGTAATTCCTTTGGGAAATGCTGAGGACTTGGATGTGGGAA
GAAACAGCCTCCAAAACTACACTATCACTCCGAATTCCCACTTCCACGTACTCACTCGCAGTCGTAGGGA
CGGAAGGAAGTACCCGGAACTAGTACTGGATAAAGCGCTCGATCCGGAGGAGCAGCCGGAACTCAGCTTA
ACGCTCACCGCGCTGGACGGCGGCTCTCCCCCTCGGTCTGGGACAGCCCAGATAAACATCCAGGTCTTAG
ATATAAACGACAATGCACCAGAATTTGCACAGCCGCTCTATGAGGTTGCAGTTCTAGAGAATACCCCCGT
TAACTCTGTCATTGTCACTGTCTCGGCTTCTGACTTAGATACAGGAAGTTTTGGGACAATATCATATGCA
TTTTTTCATGCTTCTGAAGAAATTCGCAAAACTTTTCAGCTAAATCCAATTACTGGTGATATGCAACTGG
TCAAATATTTGAATTTTGAAGCGATTAATAGTTATGAAGTCGACATCGAGGCCAAGGATGGCGGAGGCCT
ATCCGGAAAGTCTACAGTCATAGTCCAGGTGGTTGATGTCAACGACAACCCACCGGAACTGACCTTGTCT
TCAGTAAACAGCCCTATTCCTGAGAACTCGGGAGAGACTGTACTGGCTGTTTTCAGTGTTTCTGATCTAG
ACTCTGGAGACAACGGAAGAGTGATGTGTTCCATTGAGAACAATCTCCCCTTCTTCCTGAAACCATCTGT
AGAGAATTTTTACACCCTAGTGTCAGAAGGCGCGCTGGACAGAGAGACCAGATCCGAGTACAACATTACC
ATCACTATCACTGACCTGGGGACACCCAGGCTGAAAACCAAGTACAACATAACCGTGCTGGTCTCCGACG
TCAATGACAACGCCCCCGCCTTCACCCAAATCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCAGGCACCAACGCCCAGGTAACCTACTCGCTG
CTGCCGCCCCAGGACCCGCACCTGCCCCTCTCTTCCCTGGTCTCCATCAACGCGGACAACGGCCACCTGT
TTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGCGCCACAGACCGTGG
CTCCCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCTGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAATGGCGAAGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG
CCACCGCCACGCTGCATGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGC
ACCGGCCCAGGCCCAGGCCGACTTGCTCACCGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCTTCGCTC
TTCCTCTTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTC
GCTGCTCGGTGCCCGAGGGCCCCTTTCCAGGGCAGATGGTGGACGTGAGCGGCACCGGGACCCTGTCCCA
GAGCTACCAGTACGAGGTGTGTCTGACTGGAGGCTCCGGGACAAATGAGTTCAAGTTCCTGAAGCCAATT
ATCCCCAACTTCGTTGCTCAGGGTGCAGAGAGGGTTAGCGAGGCAAATCCCAGTTTCAGGAAGAGCTTTG
AATTCAGTTAA

Translation (796 aa):
MEAGGERFLRQRQVLLLFVFLGGSLAGSESRRYSVAEEKEKGFLIANLAKDLGLRVEELAARGAQVVSKG
NKQHFQLSHQTGDLLLNEKLDREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHL
KILESTLPGTVIPLGNAEDLDVGRNSLQNYTITPNSHFHVLTRSRRDGRKYPELVLDKALDPEEQPELSL
TLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLENTPVNSVIVTVSASDLDTGSFGTISYA
FFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAKDGGGLSGKSTVIVQVVDVNDNPPELTLS
SVNSPIPENSGETVLAVFSVSDLDSGDNGRVMCSIENNLPFFLKPSVENFYTLVSEGALDRETRSEYNIT
ITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL
LPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSL
FLFSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGQMVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPI
IPNFVAQGAERVSEANPSFRKSFEFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH