NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75328.1 Public Homo sapiens 5 PCDHB9 24 110 108 CCDS HistoryNCBI Gene:56127Re-query CCDS DB by CCDS ID:75328.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316105.7 ENSP00000478606.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316105.7Link to Ensembl Protein Viewer:ENSP00000478606.1Re-query CCDS DB by Nucleotide ID:ENST00000316105Re-query CCDS DB by Protein ID:ENSP00000478606
Original member Current member NCBI NM_019119.5 NP_061992.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019119.5Link to Protein Sequence:NP_061992.3Re-query CCDS DB by Nucleotide ID:NM_019119Re-query CCDS DB by Protein ID:NP_061992Link to BLAST:NP_061992.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061992.3 797 Q9Y5E1 797 100% 0 0

Chromosomal Locations for CCDS 75328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141187319 141189712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGAAGACCAGGGGGTTCAGCTTTCCAAGACAAAGGCAAGTCCTGTTTCTTTTTCTTTTCTGGGGAGTGT
CCTTGGCAGGTTCTGGGTTTGGACGTTATTCGGTGACTGAGGAAACAGAGAAAGGATCCTTTGTGGTCAA
TCTGGCAAAGGATCTGGGACTAGCAGAGGGGGAGCTGGCTGCAAGGGGAACCAGGGTGGTTTCCGATGAT
AACAAACAATACCTGCTCCTGGATTCACATACCGGGAATTTGCTCACAAATGAGAAACTGGACCGAGAGA
AGCTGTGTGGCCCTAAAGAGCCCTGTATGCTGTATTTCCAAATTTTAATGGATGATCCCTTTCAGATTTA
CCGGGCTGAGCTGAGAGTCAGGGATATAAATGATCACTCGCCAGTGTTTCGGCACAAAGAGATGGTCTTA
AAAATATCAGAAAATACAGCTGAAGGGACAGCATTTAGACTAGAAAGAGCACAGGATCCAGATGAAGGTC
ATAACAGTATCCAAAACTACACGATCAGCTCCAACTCTTTTTTCCATATTAAAATTAGTGGCAGTGATGA
AGGCATGATATATCCAGAGCTAGTGTTGGACAAAGCACTGGATCGGGAGGAGCAGGAAGAGCTCAGCTTA
ACCCTCACAGCGCTGGATGGTGGGTCTCCATCCAGGTCTGGGACCTCCACTATACGCATTGTGGTCTTGG
ATGTCAATGACAATGTCCCACAGTTTGCCCAGGCTCTGTATGAGACCCAGGCTCCAGAAAACAGTCCAGT
AGGGTCCCTTATTGTTAAAGTGTCTGCAGGAGATGCAGACTCAGGAGTCAATGCAGAAGTATCCTATTCA
TTTTTTGATGCTTCTGAAGATATTTTAACAACGTTTCAAATCAATCCTTTTTCTGGGGAAATCTTTCTCA
GAGAATTGCTTGATTATGAGTTAGTAAATTCTTACAAAATAAATATACAGGCAATGGACGGCGGAGGCCT
TTCTGCAAGATGTACAGTTTTGATAAAAGTATTAGATTCCAATGACAATCCTCCTGAACTGATCATATCA
TCACTTTCCAACTCTGTTGCTGAAAACTCTCCTGGGATAGTATTGGCTGTTTTTAAGATTAAAGACAGAG
ACTCCGGAGAAAATGGAAAGACAATTTGCTATGTTCAAGATAATCTGCCTTTTTTTCTGAAACCGTCTGT
TGACAATTTTTACATCCTAATGACTGAAGGTGCACTGGACAGAGAGAGCAAAGCTGAGTACAACATCACC
ATCACCGTCACTGACTTGGGGACACCCAGGCTGAAAACCGAGCACAGCATAACCCTGCAGGTCTCCGACG
TCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGGGAGAACAACAGCCCCGC
CCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCAGGCACCAACGCCCAGGTCACCTACTCGCTG
CTGCCGCCCCAGGACCCACACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCGGACAATGGCCACCTGT
TTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCTTTCGACTTCCGCGTGGGCGCCTCAGACCGCGG
CTCCCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTACTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCACAATGGGGAGGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTTGTCAAGGACAATGGCGAGCCTCCTCGCTCGG
CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGC
CCCGGCCCAGGCCCAGGCCGACTTGCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTC
TTCCTCCTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTC
GCTGCTCGGTGCCCGAGGGTCCTTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTGTTCCA
GAGCTACCAGTACGAGGTGTGTCTGACTGGAGGTTCAGAGACCGGCGAGTTCAAGTTCTTGAAGCCGATT
ACCCCCCACCTCCCGCCCCATAGGGGTGGGAAAGAAATAGAGGAAAATTCTACTCTCCCCAATAGCTTTG
GATTTAATTATTGA

Translation (797 aa):
MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDD
NKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHSPVFRHKEMVL
KISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHIKISGSDEGMIYPELVLDKALDREEQEELSL
TLTALDGGSPSRSGTSTIRIVVLDVNDNVPQFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYS
FFDASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIIS
SLSNSVAENSPGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT
ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL
LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPALSSEALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSL
FLLSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPI
TPHLPPHRGGKEIEENSTLPNSFGFNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH