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Report for CCDS18610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18610.1 Public Mus musculus 4 Ppie 23 108 98 CCDS HistoryNCBI Gene:56031Re-query CCDS DB by CCDS ID:18610.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030404.4 ENSMUSP00000030404.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030404.4Link to Ensembl Protein Viewer:ENSMUSP00000030404.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030404Re-query CCDS DB by Protein ID:ENSMUSP00000030404
Original member Current member NCBI NM_019489.6 NP_062362.1 Accepted alive Link to Nucleotide Sequence:NM_019489.6Link to Protein Sequence:NP_062362.1Re-query CCDS DB by Nucleotide ID:NM_019489Re-query CCDS DB by Protein ID:NP_062362Link to BLAST:NP_062362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062362.1 301 Q9QZH3 301 100% 0 0

Chromosomal Locations for CCDS 18610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123127378 123127446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123127638 123127780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123130369 123130554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123133234 123133357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123135055 123135155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123135596 123135677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123136872 123136898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123137526 123137569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123138866 123138964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123139902 123139932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGCCACCACCAAGCGTGTGCTGTACGTGGGCGGGCTGGCAGAAGAGGTGGACGACAAGGTTCTTCATG
CTGCATTTATCCCCTTTGGAGACATCACAGATATTCAAATTCCTCTGGACTATGAAACAGAAAAACACCG
AGGGTTTGCTTTTGTTGAGTTTGAGTTGGCAGAGGATGCGGCAGCAGCTATCGACAACATGAATGAATCT
GAGCTCTTTGGACGGACGATTCGTGTCAATTTGGCCAAGCCAATGAGAATTAAAGAGGGCTCTTCCAGGC
CAGTCTGGTCAGATGATGACTGGTTGAAGAAGTTTTCTGGGAAGACTCTTGAGGAGAATAAGGAAGAAGA
AGGACCCGAGCCTCCCAAAGCTGAAGCCCAGGAGGGAGAGCCCACTGCAAAAAAAGCCCGGTCAAATCCT
CAGGTGTACATGGACATCAAGATTGGGAACAAGCCAGCAGGCCGCATTCAGATGCTCCTACGGTCTGATG
TGGTGCCCATGACCGCAGAAAACTTCCGCTGCCTGTGCACCCATGAAAAGGGCTTTGGCTTCAAGGGAAG
CAGCTTCCACCGCATCATCCCCCAGTTCATGTGTCAGGGTGGTGATTTCACAAACCACAATGGCACAGGG
GGCAAGTCCATCTATGGGAAGAAGTTTGATGATGAAAACTTCATCCTTAAACACACAGGACCAGGCCTCC
TCTCCATGGCCAATTCTGGCCCGAACACCAACGGCTCCCAGTTCTTCCTGACCTGTGATAAGACAGATTG
GCTGGACGGCAAGCATGTGGTATTTGGGGAGGTCACGGAAGGCCTGGATGTCTTGCGGCAGATCGAGGCT
CAGGGCAGCAAGGATGGGAAGCCAAAGCAGAAGGTGATGATTGCCGACTGTGGAGAGTACATGTGA

Translation (301 aa):
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES
ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAEAQEGEPTAKKARSNP
QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG
GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA
QGSKDGKPKQKVMIADCGEYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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