NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46223.1 Public Homo sapiens 2 ALLC 24 110 108 CCDS HistoryNCBI Gene:55821Re-query CCDS DB by CCDS ID:46223.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252505.4 ENSP00000252505.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252505.4Link to Ensembl Protein Viewer:ENSP00000252505.3Re-query CCDS DB by Nucleotide ID:ENST00000252505Re-query CCDS DB by Protein ID:ENSP00000252505
Original member Current member NCBI NM_018436.4 NP_060906.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018436.4Link to Protein Sequence:NP_060906.3Re-query CCDS DB by Nucleotide ID:NM_018436Re-query CCDS DB by Protein ID:NP_060906Link to BLAST:NP_060906.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060906.3 391 Q8N6M5-1 391 100% 0 0

Chromosomal Locations for CCDS 46223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3671158 3671190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3674075 3674125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3678468 3678555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3679869 3679994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3681634 3681713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3682942 3683074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3695717 3695872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3696275 3696348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3697348 3697456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3701512 3701636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3702363 3702563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGACATGGCATCTGAATCCGTAGGAGGAAAAATTTTATTTGCAACAGATGACTTTTTTGCTCCTGCAG
AAAACCTCATAAAGAGTGACAGCCCGTGCTTCAAAGAGCATGAATATACGGAGTTTGGGAAATGGATGGA
TGGCTGGGAGACCAGGAGGAAAAGGATTCCAGGTCACGACTGGTGTGTCCTCAGGCTGGGGATCCAAGGA
GTCATCCGGGGCTTCGACGTGGACGTTTCTTACTTCACGGGAGATTACGCTCCTCGAGTGTCCATTCAAG
CAGCAAACTTGGAAGAAGATAAACTACCAGAAATCCCAGAAAGAGGAACCAGGACAGGAGCTGCAGCCAC
TCCTGAGGAGTTTGAAGCCATTGCTGAGCTAAAATCCGACGACTGGAGTTACTTGGTTCCCATGACTGAG
CTTAAGCCAGGAAACCCTGCTTCCGGCCACAACTATTTTCTTGTCAATTCCCAGCAGAGATGGACTCATA
TCAGACTCAACATTTTCCCAGATGGTGGAATTGCACGACTTAGAGTATTCGGTACTGGACAAAAAGACTG
GACTGCAACTGACCCCAAAGAACCTGCAGACCTAGTGGCCATCGCTTTTGGGGGTGTCTGTGTAGGATTT
AGTAATGCTAAGTTTGGGCACCCAAACAATATAATAGGAGTTGGCGGGGCAAAGTCTATGGCGGATGGTT
GGGAAACTGCAAGAAGGCTGGACCGGCCACCAATATTAGAAAATGATGAGAATGGCATTCTCTTGGTTCC
GGGTTGTGAATGGGCAGTTTTCCGATTGGCACATCCTGGAGTAATAACTCGAATTGAAATTGACACAAAA
TATTTTGAAGGCAATGCTCCTGACAGCTGTAAAGTGGATGGGTGCATCCTGACAACTCAGGAAGAAGAAG
CCGTGATCAGGCAAAAGTGGATTCTCCCGGCCCACAAGTGGAAACCACTGCTTCCAGTGACCAAGTTGTC
TCCCAACCAAAGTCATCTGTTCGATAGCCTGACCCTAGAGCTCCAAGATGTCATCACTCACGCCAGGCTC
ACCATCGTCCCCGACGGGGGAGTGAGCCGCCTTCGGCTCCGGGGCTTCCCCAGCTCCATCTGCCTCCTGA
GGCCCCGGGAGAAGCCCATGTTGAAGTTCTCGGTGAGCTTCAAAGCAAACCCTTAA

Translation (391 aa):
MDMASESVGGKILFATDDFFAPAENLIKSDSPCFKEHEYTEFGKWMDGWETRRKRIPGHDWCVLRLGIQG
VIRGFDVDVSYFTGDYAPRVSIQAANLEEDKLPEIPERGTRTGAAATPEEFEAIAELKSDDWSYLVPMTE
LKPGNPASGHNYFLVNSQQRWTHIRLNIFPDGGIARLRVFGTGQKDWTATDPKEPADLVAIAFGGVCVGF
SNAKFGHPNNIIGVGGAKSMADGWETARRLDRPPILENDENGILLVPGCEWAVFRLAHPGVITRIEIDTK
YFEGNAPDSCKVDGCILTTQEEEAVIRQKWILPAHKWKPLLPVTKLSPNQSHLFDSLTLELQDVITHARL
TIVPDGGVSRLRLRGFPSSICLLRPREKPMLKFSVSFKANP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH