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Report for CCDS51875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51875.1 Public Mus musculus 6 Syn2 23 108 98 CCDS HistoryNCBI Gene:20965Re-query CCDS DB by CCDS ID:51875.1Re-query CCDS DB by GeneID:20965See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169345.3 ENSMUSP00000133121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169345.3Link to Ensembl Protein Viewer:ENSMUSP00000133121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169345Re-query CCDS DB by Protein ID:ENSMUSP00000133121
Original member Current member EBI ENSMUST00000203450.1 ENSMUSP00000144921.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203450.1Link to Ensembl Protein Viewer:ENSMUSP00000144921.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203450Re-query CCDS DB by Protein ID:ENSMUSP00000144921
Original member Current member NCBI NM_013681.3 NP_038709.1 Accepted alive Link to Nucleotide Sequence:NM_013681.3Link to Protein Sequence:NP_038709.1Re-query CCDS DB by Nucleotide ID:NM_013681Re-query CCDS DB by Protein ID:NP_038709Link to BLAST:NP_038709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038709.1 479 Q64332-2 479 100% 0 0

Chromosomal Locations for CCDS 51875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115135081 115135460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115236014 115236071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115237255 115237346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115239359 115239515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115244146 115244235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115254163 115254225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115254590 115254732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115261655 115261729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115262522 115262624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115263832 115263981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115274196 115274324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGATGAACTTCCTGAGGCGCCGGCTGTCGGACAGCAGCTTCATCGCCAACCTGCCCAATGGCTACATGA
CTGACCTTCAGCGCCCGGAGCCGCAGCAGCCCCCTCCTGCCCCTGGCCCCGGTGCCGCTACGGCGTCGGC
GGCCACCTCAGCTGCCTCGCCCGGTCCCGAGCGCAGGCCGCCACCCGCCCAGGCACCCGCGCCGCAGCCG
GCGCCGCAGCCCGCGCCGACGCCGTCGGTGGGCAGCAGCTTCTTCAGCTCGCTGTCGCAAGCGGTGAAGC
AGACGGCCGCCTCCGCCGGCCTGGTGGACGCGCCCGCACCTTCGGCCGCTTCCAGGAAGGCCAAGGTGCT
GCTGGTGGTCGACGAGCCGCACACCGACTGGGCCAAATGCTTTCGGGGCAAAAAAATCCTTGGAGATTAT
GACATCAAGGTGGAACAGGCAGAATTCTCAGAGCTTAACCTGGTGGCCCATGCAGATGGAACCTACGCCG
TGGACATGCAGGTACTTCGGAATGGCACAAAGGTTGTCCGGTCCTTCAGACCAGACTTTGTGCTCATCCG
ACAGCATGCATTTGGCATGGCAGAGAATGAAGACTTCCGCCACCTGGTCATTGGCATGCAGTACGCAGGC
CTCCCCAGCATCAACTCTCTGGAGTCTATTTACAACTTCTGTGACAAGCCGTGGGTGTTTGCTCAGATGG
TGGCCATCTTCAAGACACTGGGAGGGGAGAAATTCCCACTCATTGAGCAGACATACTACCCCAATCACCG
AGAGATGCTTACGCTTCCTACGTTCCCTGTGGTGGTGAAGATTGGCCATGCTCACTCAGGCATGGGCAAG
GTCAAAGTGGAAAATCACTACGACTTCCAGGACATTGCCAGTGTGGTGGCCCTCACCCAAACTTATGCCA
CGGCAGAACCCTTCATCGACGCCAAGTATGACATCCGAGTTCAGAAGATTGGCAACAACTACAAGGCCTA
CATGAGGACATCCATCTCAGGGAACTGGAAGACAAACACTGGCTCGGCGATGCTGGAGCAAATTGCCATG
TCGGACCGGTACAAGCTCTGGGTAGATGCCTGCTCTGAAATGTTTGGTGGCCTGGACATCTGTGCAGTCA
AAGCCGTGCATGGCAAAGATGGCAAAGACTACATTTTTGAGGTCATGGACTGCAGCATGCCATTGATTGG
GGAACACCAAGTGGAGGACAGACAACTCATCACTGATCTAGTCATCAGCAAGATGAACCAGCTATTGTCC
AGGACTCCTGCCCTGTCTCCACAGAGACCTTTAACCACCCAACAGCCACAGAGTGGAACACTTAAGGAAC
CGGACTCCAGCAAGACCCCTCCTCAGCGGCCACCTCCCCAAGGTTGTTTACAGTATATTCTCGACTGTAA
TGGCATTGCAGTAGGTCCAAAACAAGTCCAAGCTTCTTAA

Translation (479 aa):
MMNFLRRRLSDSSFIANLPNGYMTDLQRPEPQQPPPAPGPGAATASAATSAASPGPERRPPPAQAPAPQP
APQPAPTPSVGSSFFSSLSQAVKQTAASAGLVDAPAPSAASRKAKVLLVVDEPHTDWAKCFRGKKILGDY
DIKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAG
LPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGK
VKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAM
SDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS
RTPALSPQRPLTTQQPQSGTLKEPDSSKTPPQRPPPQGCLQYILDCNGIAVGPKQVQAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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