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Report for CCDS1415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1415.1 Public Homo sapiens 1 IPO9 24 110 108 CCDS HistoryNCBI Gene:55705Re-query CCDS DB by CCDS ID:1415.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361565.9 ENSP00000354742.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361565.9Link to Ensembl Protein Viewer:ENSP00000354742.4Re-query CCDS DB by Nucleotide ID:ENST00000361565Re-query CCDS DB by Protein ID:ENSP00000354742
Original member Current member NCBI NM_018085.5 NP_060555.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018085.5Link to Protein Sequence:NP_060555.2Re-query CCDS DB by Nucleotide ID:NM_018085Re-query CCDS DB by Protein ID:NP_060555Link to BLAST:NP_060555.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060555.2 1041 Q96P70 1041 100% 0 0

Chromosomal Locations for CCDS 1415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201829210 201829372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201847279 201847340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201847552 201847638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201848393 201848594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201852104 201852192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201853011 201853097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201854595 201854714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201854823 201854923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201855124 201855182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201855783 201855934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201857096 201857194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201858447 201858553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201858855 201858994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201863448 201863607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201866733 201866959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201868648 201868796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201869590 201869718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201870583 201870858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201871161 201871327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201872828 201872961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201874250 201874372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201874832 201874936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201875152 201875228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201875944 201876054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3126 nt):
ATGGCGGCGGCGGCGGCAGCTGGTGCGGCCTCCGGGCTGCCGGGTCCAGTGGCACAAGGATTAAAGGAAG
CGTTAGTGGATACGCTCACCGGGATCCTATCCCCAGTACAGGAGGTGCGGGCGGCTGCTGAAGAACAGAT
TAAGGTGCTGGAGGTGACGGAGGAATTTGGTGTTCACTTGGCAGAACTGACTGTAGATCCCCAGGGGGCA
CTGGCAATCCGTCAGCTGGCATCAGTCATCTTGAAACAATATGTGGAGACTCACTGGTGTGCCCAATCAG
AGAAATTTAGGCCTCCTGAAACTACAGAAAGGGCAAAAATTGTTATCCGGGAGCTATTGCCTAATGGGTT
GAGAGAATCGATAAGCAAAGTGCGCTCCAGTGTGGCCTATGCAGTGTCAGCCATTGCCCACTGGGACTGG
CCTGAAGCTTGGCCCCAACTCTTCAACCTGCTCATGGAGATGTTGGTGAGCGGAGACTTAAATGCCGTCC
ATGGAGCCATGCGTGTGCTGACAGAATTCACTCGTGAAGTAACAGACACACAGATGCCACTTGTTGCTCC
TGTCATTCTCCCAGAGATGTATAAGATCTTCACCATGGCTGAGGTGTATGGTATTCGAACCCGTTCCCGA
GCCGTGGAGATTTTTACCACTTGTGCCCATATGATCTGTAACATGGAGGAGCTGGAAAAGGGTGCAGCCA
AAGTCCTGATCTTTCCCGTGGTACAGCAGTTCACAGAGGCCTTTGTTCAGGCCCTCCAGATACCAGATGG
CCCCACATCTGACAGTGGGTTTAAGATGGAGGTCCTAAAGGCAGTGACAGCCCTAGTGAAAAACTTCCCA
AAGCACATGGTGTCCTCCATGCAGCAGATTCTGCCTATTGTTTGGAACACCCTAACCGAGAGTGCAGCTT
TTTATGTGAGGACAGAAGTAAATTACACAGAAGAAGTAGAAGATCCTGTGGATTCTGATGGTGAAGTCCT
GGGCTTTGAAAATCTCGTCTTTAGCATTTTTGAATTTGTCCATGCTCTACTAGAAAATAGCAAATTCAAA
AGCACTGTTAAGAAAGCCTTGCCTGAATTGATTTATTATATTATCCTGTACATGCAAATCACTGAGGAGC
AGATTAAAGTATGGACAGCCAACCCCCAACAATTTGTAGAAGATGAAGATGATGATACATTCTCCTATAC
TGTTAGAATAGCAGCTCAAGACTTGTTGCTGGCTGTGGCCACAGATTTCCAGAATGAAAGTGCAGCAGCC
CTGGCTGCTGCAGCCACTCGACATTTACAAGAAGCTGAGCAAACCAAAAACAGTGGCACTGAGCACTGGT
GGAAGATCCATGAGGCATGCATGCTTGCCCTAGGCTCAGTGAAGGCCATCATCACTGACAGTGTGAAAAA
TGGCAGGATTCATTTTGACATGCATGGGTTCCTGACCAATGTCATCCTTGCAGACCTCAACCTCTCAGTG
TCTCCTTTCCTCTTGGGCCGGGCACTTTGGGCTGCCAGTCGGTTCACTGTTGCTATGTCCCCTGAACTGA
TCCAGCAGTTCCTACAGGCAACAGTTAGTGGTCTTCACGAGACACAGCCCCCATCAGTTCGAATTTCTGC
AGTGAGAGCCATCTGGGGTTATTGTGACCAACTGAAAGTCTCAGAGAGTACCCACGTGCTCCAGCCCTTC
CTCCCCAGCATCCTTGATGGCTTAATTCACCTAGCAGCCCAGTTCAGCTCAGAGGTCCTCAACCTGGTGA
TGGAGACCCTGTGCATCGTTTGTACAGTAGACCCCGAATTCACAGCAAGCATGGAAAGCAAAATCTGCCC
CTTCACCATCGCCATTTTCCTAAAGTACAGTAATGATCCCGTCGTCGCCTCACTGGCTCAGGACATCTTC
AAGGAGCTGTCCCAGATTGAAGCCTGTCAGGGCCCAATGCAAATGAGGCTGATTCCCACTCTGGTCAGCA
TAATGCAGGCCCCAGCAGACAAGATTCCTGCAGGGCTTTGTGCGACAGCCATTGATATCCTGACAACAGT
AGTACGAAATACAAAGCCTCCCCTTTCCCAGCTTCTCATCTGCCAAGCTTTCCCTGCTGTGGCACAGTGT
ACCCTTCACACAGATGACAATGCCACCATGCAGAATGGCGGAGAGTGCTTGCGGGCCTATGTGTCAGTGA
CCCTGGAACAAGTAGCCCAGTGGCATGATGAGCAGGGCCACAATGGACTGTGGTATGTGATGCAAGTGGT
GAGCCAGCTCCTGGACCCCCGCACCTCAGAGTTCACTGCGGCCTTTGTGGGCCGCCTTGTTTCCACCCTC
ATCTCCAAGGCAGGGCGGGAACTCGGGGAGAATCTAGACCAGATTCTTCGTGCCATCCTCAGTAAGATGC
AGCAGGCAGAGACGCTCAGTGTCATGCAGTCCCTGATCATGGTGTTCGCTCATCTGGTGCACACTCAGCT
AGAACCTCTCTTGGAGTTCCTGTGTAGCCTCCCAGGACCTACTGGCAAACCTGCTCTAGAGTTTGTGATG
GCTGAGTGGACAAGCCGACAGCACCTGTTCTATGGACAGTATGAAGGCAAAGTCAGCTCTGTGGCACTCT
GTAAGCTGCTCCAGCATGGCATCAATGCAGATGACAAACGGCTACAGGATATCCGTGTGAAGGGAGAGGA
GATCTACAGCATGGATGAGGGCATCCGCACCCGCTCTAAGTCAGCCAAAAACCCAGAACGCTGGACAAAC
ATTCCTTTGCTGGTCAAGATCCTAAAGCTGATCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCG
CTCGCCAGGCCACTCCTGCAGAGTGGAGTCAAGATGACTCCAATGATATGTGGGAGGACCAGGAGGAGGA
AGAGGAGGAGGAGGAGGATGGTTTAGCTGGCCAACTTTTATCTGACATTCTTGCTACAAGTAAATATGAG
GAGGATTACTACGAGGATGATGAGGAAGATGACCCTGATGCCCTGAAGGATCCTCTCTATCAGATTGATC
TGCAGGCATATCTCACAGATTTCCTCTGCCAGTTTGCTCAGCAGCCCTGCTACATAATGTTTTCAGGCCA
CCTTAATGACAATGAGAGGCGAGTTCTACAGACCATCGGCATCTAA

Translation (1041 aa):
MAAAAAAGAASGLPGPVAQGLKEALVDTLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGA
LAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDW
PEAWPQLFNLLMEMLVSGDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVYGIRTRSR
AVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQIPDGPTSDSGFKMEVLKAVTALVKNFP
KHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFK
STVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAA
LAAAATRHLQEAEQTKNSGTEHWWKIHEACMLALGSVKAIITDSVKNGRIHFDMHGFLTNVILADLNLSV
SPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPF
LPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASMESKICPFTIAIFLKYSNDPVVASLAQDIF
KELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQC
TLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTL
ISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVM
AEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTN
IPLLVKILKLIINELSNVMEANAARQATPAEWSQDDSNDMWEDQEEEEEEEEDGLAGQLLSDILATSKYE
EDYYEDDEEDDPDALKDPLYQIDLQAYLTDFLCQFAQQPCYIMFSGHLNDNERRVLQTIGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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