NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34278.1 Public Homo sapiens 5 RBM22 24 110 108 CCDS HistoryNCBI Gene:55696Re-query CCDS DB by CCDS ID:34278.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000199814.9 ENSP00000199814.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000199814.9Link to Ensembl Protein Viewer:ENSP00000199814.4Re-query CCDS DB by Nucleotide ID:ENST00000199814Re-query CCDS DB by Protein ID:ENSP00000199814
Original member Current member NCBI NM_018047.3 NP_060517.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018047.3Link to Protein Sequence:NP_060517.1Re-query CCDS DB by Nucleotide ID:NM_018047Re-query CCDS DB by Protein ID:NP_060517Link to BLAST:NP_060517.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060517.1 420 Q9NW64-1 420 100% 0 0

Chromosomal Locations for CCDS 34278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150691751 150691881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150692895 150693026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150693219 150693307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150694076 150694240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150695506 150695706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150696533 150696705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150696791 150696891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150698499 150698631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150699242 150699271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150700444 150700497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 150700932 150700985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGT
GCCAGACATGTCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAAT
CTGTGCCAGGCCATTCACAGTGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTG
TGCCAAACCTGCAGTAAATTGAAGAATGTCTGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCA
TCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGATGACATGCCAAAGTCAGATGTCAACAAAGAGTACTA
TACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAGTTGGCATGCTGGGGAAAGCC
ACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAATCGACCCCACA
TTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGACCGTTATTACGGAATCAATGATCCTGTAGCT
GACAAGCTTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACAC
TATATGTTGGTGGTCTAGGTGATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTCGGAGA
GATCCGGACGATCACTGTTGTGCAGAGACAGCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCA
GAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAAATGGCCGCAGACTGAATGTGAAATGGGGAA
GATCCCAGGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACTACAGACTCTGGGATCAAACTAGAACC
TGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCAGCAGAAGAAGAAGCCTCTGCCAACTACTTC
AACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGCATTGCTCCAC
CCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGCGGGCTCC
AGGACCAATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCC
TAG

Translation (420 aa):
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV
CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLGKA
TSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVA
DKLLKRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAA
EVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEASANYF
NLPPSGPPAVVNIALPPPPGIAPPPPPGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAHAGKHSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH